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#!/bin/sh
if [ -n "$FASTQC_JAVA" ]; then
javaenv="$FASTQC_JAVA"
else
default_java="$(archlinux-java get)"
if [ "$(echo "$default_java" | cut -d - -f 2)" -ge 11 ]; then
javaenv="$default_java"
else
# use latest available java
javaenv="$(archlinux-java status | tail -n +2 | cut -d ' ' -f 3 | sort -nk 2 -t - | tail -n 1)"
fi
fi
PATH="/usr/lib/jvm/$javaenv/bin:$PATH" exec /usr/share/fastqc/fastqc "$@"
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