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diff -rup old/src/count_qmers.cpp new/src/count_qmers.cpp
--- old/src/count_qmers.cpp	2012-04-03 12:12:24.000000000 -0400
+++ new/src/count_qmers.cpp	2012-06-14 23:41:10.410659104 -0400
@@ -4,6 +4,7 @@
 #include  <iostream>
 #include  <fstream>
 #include  <math.h>
+#include  <unistd.h>
 #include  "count.h"
 #include "qmer_hash.h"
 
diff -rup old/src/count-qmers.cpp new/src/count-qmers.cpp
--- old/src/count-qmers.cpp	2012-04-03 12:12:24.000000000 -0400
+++ new/src/count-qmers.cpp	2012-06-14 23:41:13.487325583 -0400
@@ -4,6 +4,7 @@
 #include  <iostream>
 #include  <fstream>
 #include  <math.h>
+#include  <unistd.h>
 #include  "count.h"
 
 using namespace std;
diff -rup old/src/stats.cpp new/src/stats.cpp
--- old/src/stats.cpp	2012-04-03 12:12:24.000000000 -0400
+++ new/src/stats.cpp	2012-06-14 23:41:16.890658706 -0400
@@ -3,6 +3,7 @@
 #include <vector>
 #include <map>
 #include <cstring>
+#include <unistd.h>
 
 #include <ext/hash_map>
 namespace Sgi = ::__gnu_cxx;         // GCC 4.0 and later