outils
|
0.13-1 |
0 |
0.00
|
A port of some non-standard OpenBSD tools to Linux |
kbipinkumar
|
2023-10-20 18:03 (UTC) |
oligoarrayaux
|
3.8.1-1 |
0 |
0.00
|
A subset of the UNAFold package for use with OligoArray |
kbipinkumar
|
2023-03-07 04:34 (UTC) |
nthash-bcgsc
|
2.3.0-3 |
0 |
0.00
|
Fast hash function for DNA/RNA sequences. https://doi.org/10.1093/bioinformatics/btac564 |
kbipinkumar
|
2023-11-09 00:01 (UTC) |
nanostat
|
1.6.0-1 |
0 |
0.00
|
Create statistic summary of an Oxford Nanopore read dataset |
kbipinkumar
|
2023-08-05 09:06 (UTC) |
nanoqc
|
0.9.4-1 |
0 |
0.00
|
Create fastQC-like plots for Oxford Nanopore sequencing data |
kbipinkumar
|
2023-08-06 05:29 (UTC) |
nanomath
|
1.3.0-2 |
0 |
0.00
|
simple math function for other Oxford Nanopore processing scripts |
kbipinkumar
|
2023-08-05 06:03 (UTC) |
nanoget
|
1.19.3-1 |
0 |
0.00
|
Functions to extract useful metrics from Oxford Nanopore sequencing reads and alignments |
kbipinkumar
|
2023-09-20 00:01 (UTC) |
mutmap
|
2.3.4-1 |
0 |
0.00
|
Pipeline to identify causative mutations responsible for a phenotype. https://doi.org/10.7717/peerj.13170 |
kbipinkumar
|
2023-09-13 00:02 (UTC) |
mmseqs2-sse4
|
15.6f452-2 |
0 |
0.00
|
ultra fast and sensitive search and clustering suite optimised for SSE4 instructions. https://doi.org/10.1038/nbt.3988 |
kbipinkumar
|
2023-11-14 06:10 (UTC) |
mmseqs2-avx2
|
15.6f452-2 |
0 |
0.00
|
ultra fast and sensitive search and clustering suite optimised for AVX2 instructions. https://doi.org/10.1038/nbt.3988 |
kbipinkumar
|
2023-11-14 06:10 (UTC) |
mhap
|
2.1.3-2 |
0 |
0.00
|
A locality-sensitive hashing to detect long-read overlaps. https://doi.org/10.1038/nbt.3238 |
kbipinkumar
|
2023-06-23 18:02 (UTC) |
mashmap
|
3.1.3-1 |
0 |
0.00
|
Fast approximate aligner for long DNA sequences |
kbipinkumar
|
2024-01-04 18:02 (UTC) |
lollipops
|
1.7.1-1 |
0 |
0.00
|
Lollipop-style mutation diagrams for annotating genetic variations. https://doi.org/10.1371/journal.pone.0160519 |
kbipinkumar
|
2023-10-05 06:01 (UTC) |
libxtend
|
0.2.0-1 |
0 |
0.00
|
A library of miscellaneous generic C functions |
kbipinkumar
|
2023-10-23 18:03 (UTC) |
kraken2
|
2.1.3-1 |
0 |
0.00
|
Improved vesion of kraken ultrafast metagenomic sequence classification tool. https://doi.org/10.1186/s13059-019-1891-0 |
kbipinkumar
|
2023-06-07 12:01 (UTC) |
hifiasm
|
0.19.9-1 |
0 |
0.00
|
Haplotype-resolved de novo assembler for PacBio Hifi reads. https://doi.org/10.1038/s41592-020-01056-5 |
kbipinkumar
|
2024-05-06 18:04 (UTC) |
gri
|
1:2.12.27-2 |
2 |
0.00
|
A script-based language for scientific graphics programming |
kbipinkumar
|
2024-04-16 07:56 (UTC) |
generand
|
0.1.2-3 |
0 |
0.00
|
Simple and fast tool for generating random genomic data in common formats for testing and benchmarking purposes |
kbipinkumar
|
2023-06-11 15:16 (UTC) |
flair
|
2.0.0-1 |
0 |
0.00
|
Tool for correction, isoform definition, and alternative splicing analysis of nanopore cDNA, native RNA, and PacBio sequencing reads |
kbipinkumar
|
2023-06-14 00:01 (UTC) |
fastq-trim
|
0.1.3-1 |
0 |
0.00
|
Lightening fast read trimmer |
kbipinkumar
|
2023-10-24 18:03 (UTC) |
fastani
|
1.34-1 |
0 |
0.00
|
Fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). |
kbipinkumar
|
2023-07-31 00:01 (UTC) |
fastahack
|
1.0.0-3 |
0 |
0.00
|
utilities for indexing and sequence extraction from FASTA files |
kbipinkumar
|
2023-06-02 00:01 (UTC) |
fasda
|
0.1.5-1 |
0 |
0.00
|
Fast And Simple Differential Analysis of transcriptomic data |
kbipinkumar
|
2023-10-24 18:02 (UTC) |
estscan-doc
|
3.0.3-2 |
0 |
0.00
|
Documentation for estscan |
kbipinkumar
|
2023-04-15 18:01 (UTC) |
estscan
|
3.0.3-2 |
0 |
0.00
|
ORF-independent detector of coding DNA sequences |
kbipinkumar
|
2023-04-15 18:01 (UTC) |
cutadapt
|
4.8-1 |
0 |
0.00
|
Remove adapter sequences from high-throughput sequencing reads. doi:10.14806/ej.17.1.200 |
kbipinkumar
|
2024-04-12 18:21 (UTC) |
cramino
|
0.14.5-1 |
0 |
0.00
|
A fast tool for BAM/CRAM quality evaluation of long reads. https://doi.org/10.1093/bioinformatics/btad311 |
kbipinkumar
|
2024-02-27 18:06 (UTC) |
codonw
|
1.4.4-2 |
0 |
0.00
|
Multivariate analysis (correspondence analysis) of codon and amino acid usage |
kbipinkumar
|
2023-04-02 06:01 (UTC) |
chopper
|
0.8.0-1 |
0 |
0.00
|
Rust implementation of NanoFilt+NanoLyse intended for long read sequencing |
kbipinkumar
|
2024-04-20 00:02 (UTC) |
centrifuge
|
1.0.4.1-1 |
1 |
0.00
|
Rapid and memory-efficient tool for classification of metagenomic sequences |
kbipinkumar
|
2024-02-01 18:02 (UTC) |
cdbfasta-git
|
r4.014498c-1 |
0 |
0.00
|
CDB (Constant DataBase) indexing and retrieval tools for FASTA files |
kbipinkumar
|
2022-11-30 13:08 (UTC) |
bustools
|
0.43.2-1 |
0 |
0.00
|
Program for manipulating BUS files for single cell RNA-Seq datasets. doi:10.1038/s41587-021-00870-2 |
kbipinkumar
|
2024-01-04 12:09 (UTC) |
bracken
|
2.9-1 |
0 |
0.00
|
Bayesian Reestimation of Abundance with KrakEN. https://doi.org/10.7717/peerj-cs.104 |
kbipinkumar
|
2023-09-21 00:02 (UTC) |
biolibc
|
0.2.6-1 |
0 |
0.00
|
High-performance, memory-efficient bioinformatics library |
kbipinkumar
|
2023-10-23 18:04 (UTC) |
augustus
|
3.5.0-5 |
0 |
0.00
|
A eukaryotic gene prediction program |
kbipinkumar
|
2023-06-11 18:09 (UTC) |
any2fasta
|
0.4.2-1 |
0 |
0.00
|
convert various sequence formats to FASTA |
kbipinkumar
|
2023-05-08 13:57 (UTC) |
amrfinderplus
|
3.12.8-2 |
0 |
0.00
|
Identify Antimicrobial resistance genes in assembled bacterial nucleotide and protein sequence. https://doi.org/10.1038/s41598-021-91456-0 |
kbipinkumar
|
2024-03-03 18:02 (UTC) |
allelecount
|
4.3.0-1 |
0 |
0.00
|
program for estimating the NGS copy number |
kbipinkumar
|
2023-05-09 09:51 (UTC) |
alevin-fry
|
0.9.0-1 |
0 |
0.00
|
A suite of tools for the rapid, accurate and memory-frugal processing single-cell and single-nucleus sequencing data |
kbipinkumar
|
2024-03-09 00:03 (UTC) |
agat
|
1.4.0-1 |
0 |
0.00
|
Another Gtf/Gff Analysis Toolkit is a suite of tools to handle gene annotations in GTF/GFF format. doi:10.5281/zenodo.3552717 |
kbipinkumar
|
2024-04-05 18:13 (UTC) |
aevol
|
5.0-2 |
0 |
0.00
|
an open-source digital genetics platform that captures the evolutionary process |
kbipinkumar
|
2023-05-09 05:59 (UTC) |
adapterremoval
|
2.3.3-2 |
0 |
0.00
|
Remove remnant adapter sequences from High-Throughput Sequencing (HTS) data and trim low quality bases from the 3 prime end |
kbipinkumar
|
2023-04-02 06:02 (UTC) |
ad2vcf
|
0.1.6-6 |
0 |
0.00
|
Tool to add allelic depth info from a SAM stream to a VCF file |
kbipinkumar
|
2023-02-12 12:03 (UTC) |
abpoa
|
1.5.1-1 |
0 |
0.00
|
SIMD-based C library for fast partial order alignment. https://dx.doi.org/10.1093/bioinformatics/btaa963 |
kbipinkumar
|
2024-01-16 06:03 (UTC) |
soapyairspyhf-git
|
2:r28.b6cfbf5-1 |
0 |
0.00
|
SoapySDR plugin for Airspy HF+ |
kbeckmann
|
2023-04-10 01:02 (UTC) |
gds3d-git
|
r38.173da0c-1 |
0 |
0.00
|
An application used for rendering IC (chip) layouts in 3D |
kbeckmann
|
2023-04-10 01:01 (UTC) |
appcsxcad-git
|
20200104-1 |
1 |
0.00
|
Minimal GUI Application using the QCSXCAD library. Built from git. |
kbeckmann
|
2024-03-15 21:32 (UTC) |
airspyhf-git
|
r90.2bf53e1-1 |
3 |
0.12
|
Host code for AirspyHF+ SDR. |
kbeckmann
|
2023-04-10 00:41 (UTC) |
vib
|
0.7.0-1 |
0 |
0.00
|
Vib (Vanilla Image Builder) is a tool that allow generating Containerfile(s) using a Flatpak-like recipe and syntax. |
kbdharunkrishna
|
2024-04-22 07:27 (UTC) |
cutekit-git
|
r90.004a5f4-1 |
0 |
0.00
|
An operating system development kit. |
kbd-slayer
|
2023-05-28 20:21 (UTC) |