Package Details: fiji-bin 2:20250302.2217-1

Git Clone URL: https://aur.archlinux.org/fiji-bin.git (read-only, click to copy)
Package Base: fiji-bin
Description: ImageJ distribution with a lot of plugins for scientific (especially biology related) image processing.
Upstream URL: http://fiji.sc/
Licenses: GPL
Submitter: hottea
Maintainer: flomine
Last Packager: flomine
Votes: 25
Popularity: 0.63
First Submitted: 2019-11-15 07:19 (UTC)
Last Updated: 2025-03-04 16:29 (UTC)

Dependencies (4)

Required by (1)

Sources (1)

Latest Comments

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user9665 commented on 2019-08-15 09:50 (UTC)

Minor improvement to automatically set pkgver. I'm not quite sure how a patch can be submitted here. Cheers Jacopo

diff --git a/PKGBUILD b/PKGBUILD index 4dc18c2..4abcd57 100644 --- a/PKGBUILD +++ b/PKGBUILD @@ -1,8 +1,13 @@ # Maintainer: Eugene Dvoretsky <radioxoma from gmail com> # Contributor: dreieck

+# wget -q -O tmp.html https://downloads.imagej.net/fiji/latest/ +# RELEASE_URL=cat tmp.html | grep -m 1 -o -E "https[^<>]*?fiji-nojre.zip" | head -1 +# echo $RELEASE_URL +# exit + pkgname="fiji-binary" -pkgver="20170530" +pkgver=wget -q -O - <https://downloads.imagej.net/fiji/latest/> | grep fiji-nojre.zip | sed -E 's/^.*([0-9]{4}-[0-9]{2}-[0-9]{2}).*$/\1/' | sed 's/-//g' pkgrel="1" pkgdesc="ImageJ distribution with a lot of plugins for scientific (especially biology related) image processing." arch=('i686' 'x86_64') @@ -18,10 +23,10 @@ install=fiji.install

## Life-line

-source=("https://downloads.imagej.net/fiji/Life-Line/fiji-nojre-${pkgver}.zip" +source=("https://downloads.imagej.net/fiji/latest/fiji-nojre.zip" "fiji.desktop" "fiji.install") -sha256sums=('cf9fb45c48b22a7888b479968477f1f7a300a9c833e47244cbe0d1e93890bd20' +sha256sums=('SKIP' '788a32dd0b24f482e78d5ec3209e9d5b3493a59e1da6edf82b1373e87c0320bc' '6dcc861af9328076282893ffcecc77a7fee448cec51fb7ccd51c5cece9740fa1')

@@ -54,6 +59,7 @@ build() _removefrompackage=('Contents' 'ImageJ-linux32' 'ImageJ-linux64' 'ImageJ-win32.exe' 'ImageJ-win64.exe' 'plugins/Fiji_Updater.jar' + 'plugins/imagej-updater*.jar' ) _executablebak="$(mktemp)" || exit 21 # Save the executable matching our architecture.

petecan commented on 2016-02-22 12:44 (UTC)

In my case, for getting rid of unnecessary "cannot update" messages, it is not enough to get rid of "plugins/Fiji_Updater.jar", but also of "jars/imagej-updater-0.7.8.jar". Probably we could use a glob to avoid forgetting to change the jar version. Cheers Santi

boina commented on 2015-12-01 04:59 (UTC)

Thank you a lot!! I should have locked at the PKGBUILD before. I uncommented the latest source and worked flawlesly!! Best, Jose.

radioxoma commented on 2015-11-30 13:27 (UTC) (edited on 2016-01-17 00:00 (UTC) by radioxoma)

This package wasn't supposed to be "updatable" - just latest lifeline version. `Fiji_Updater.jar` was removed during makepkg run (see PKGBUILD source, https://aur.archlinux.org/cgit/aur.git/tree/PKGBUILD?h=fiji-binary&id=b664017f73f99246c31796b9fdde4d8e0ff96a0f#n53). If you would like to use latest Fiji, there are two ways: 1. Edit the PKGBUILD and change source to latest build (I intentionally left it in commented section) and reinstall the package. Also you could change package version to download date, so new lifeline release, which can be outdated relatively to your current installation, won't be bothering you. 2. Just unpack and use vanilla archive from http://fiji.sc/Downloads somewhere in $HOME directory. Cheers, Eugene.

boina commented on 2015-11-28 00:23 (UTC)

Thanks for the package. I have one problem tough. I needed to update the bioformats plugin and so started imagej as root. After the update fiji won't start anymore as a regular user with the following warning: "Could not move /opt/fiji/update/scripts/Miji.m to /opt/fiji/scripts/Miji.m: Permission denied" Regards, jose.

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