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Package Details: fsl 6.0.0-1
| Git Clone URL: | https://aur.archlinux.org/fsl.git (read-only) |
|---|---|
| Package Base: | fsl |
| Description: | A comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data |
| Upstream URL: | http://www.fmrib.ox.ac.uk/fsl/ |
| Licenses: | |
| Submitter: | fishburn |
| Maintainer: | tobac |
| Last Packager: | tobac |
| Votes: | 9 |
| Popularity: | 0.005637 |
| First Submitted: | 2012-07-02 23:36 |
| Last Updated: | 2018-11-26 16:48 |
Dependencies (21)
- bc
- boost-libs
- fslpy
- gd
- glu
- gsl
- libpng (libpng-git)
- libxml++2.6
- libxml2 (libxml2-linenum, libxml2-git)
- newmat
- nlopt
- python (python-dbg)
- python3 (python)
- sqlite (sqlite-fossil, sqlite-replication)
- tcl (tcl85, tcl-nothreading)
- tk (tk85)
- vtk (vtk-git, vtk-visit)
- zlib (zlib-asm, zlib-static, zlib-git)
- boost (make)
- fftw (fftw-mpich, fftw-mpi) (make)
- cuda (cuda65) (optional)
Required by (2)
- fsleyes
- python-nipype (optional)
Latest Comments
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fishburn commented on 2018-11-30 18:31
@tobac Great job with the package! Definitely much cleaner now. I just always hate trying to figure out what changed when the patch no longer applies after a version change (though still better than sed silently failing). Also curious to see if the phenomenon persists where a working package just changes hashes or stops building without any version change.
tobac commented on 2018-11-26 16:54
I adopted the package, rewrote the PKGBUILD to use less sed magic and adopted instead a patch-based modification technique (although having one huge patch file for environment modification doesn't strike me as particularly elegant either). Fishburn is absolutely right, it is an awful package to maintain. Anyway, it builds, tests run successfully and it seems to work.
fishburn commented on 2018-11-14 16:13
I'm abandoning this until they adopt a typical build system (e.g., automake, cmake). Best of luck
VP1 commented on 2018-11-14 07:12
Hi, I tried installing this on my Antergos system. It was not able to install the vtk6 dependency. So, I got the latest vtk package (v8.1.1 community package) installed and linked that in the FSL pkgbuild file. It began installation but aborted from an error in making mist-clean. As per build.log: !!ERROR in BUILD!! Could not make the following projects successfully: mist-clean
Please help resolve this. Thanks!
gbs commented on 2018-06-16 19:58
Just a heads-up that I changed the vtk6 library suffix, and you might want to update your
externallibs.mkto match.fishburn commented on 2018-05-04 15:47
Updated to 5.0.11. I'm now bundling the scripts that were removed in this version.
tobac commented on 2018-05-02 21:24
Oh, that's strange. I'm on the FSL mailing list and haven't had any trouble subscribing.
fishburn commented on 2018-05-02 21:21
@tobac There appear to be some key files missing (imcp, etc). The build succeeds but then the check fails. I tried joining the FSL mailing list to let them know, but haven't had any luck getting on there.
tobac commented on 2018-05-02 17:24
Is there a reason you won't bump to 5.0.11?
fishburn commented on 2018-04-16 17:26
@dvogel @jnvandermeer @hottea
Build is working for me with only VTK 6 installed. The headers for VTK 6 are located in /opt/vtk6/include/vtk/. This is the path that I have specified in the externallibs.mk file that I have included in the package. My current thinking is that my .mk files weren't getting copied over for some people, so I have modified the PKGBUILD to hopefully remedy this.
Please let me know if you still get errors and what they are. Thanks.