Package Details: python-nipype 1.7.0-1

Git Clone URL: https://aur.archlinux.org/python-nipype.git (read-only, click to copy)
Package Base: python-nipype
Description: Neuroimaging in python pipelines and interfaces
Upstream URL: https://github.com/nipy/nipype
Keywords: mri neuroimaging nipy
Licenses: Apache
Submitter: fishburn
Maintainer: liamtimms
Last Packager: liamtimms
Votes: 0
Popularity: 0.000000
First Submitted: 2018-03-09 18:42 (UTC)
Last Updated: 2021-12-17 20:35 (UTC)

Latest Comments

liamtimms commented on 2022-05-25 19:42 (UTC)

I cannot update this package until the new dependency: https://github.com/effigies/looseversion has been packaged as well. Please attempt to package that dependency before reporting this package as out of date.

liamtimms commented on 2021-12-17 20:52 (UTC)

A nonzero amount of the check function is fairly broken right now but you can get around it using makepkg --nocheck. I am not completely removing it because I want users to be aware of any failing checks before using the package. I am testing -git versions of a few packages to see if I can get around these issues.

liamtimms commented on 2021-07-30 01:11 (UTC)

@keiichiiownsu12 I can confirm this on my side too. My first guess is that it's because we are on Python 3.9 on Arch but nipype is only officially for up to 3.8. We are technically outside the bounds of official support. However, it may be worth talking to upstream. I can file a report in a few days or you can work on it now if you like. In the meantime, you could try disabling the testing and see if it actually affects your workflows.

keiichiiownsu12 commented on 2021-07-30 00:26 (UTC) (edited on 2021-07-30 00:42 (UTC) by keiichiiownsu12)

When installing nipype 1.5.1, the testing phase produces >30 repeated errors involving the following:

nipype/interfaces/dipy/__init__.py:5: in <module>
    from .preprocess import Resample, Denoise
nipype/interfaces/dipy/preprocess.py:27: in <module>
    globals()[new_name] = dipy_to_nipype_interface(new_name, obj)
nipype/interfaces/dipy/base.py:194: in dipy_to_nipype_interface
    args + (val,) for args, val in zip(parser.optional_parameters, default_values)
E   TypeError: 'NoneType' object is not iterable

(Same error across ~30 scripts). Have not seen mention of this upstream...

liamtimms commented on 2019-10-02 21:50 (UTC) (edited on 2020-06-04 17:25 (UTC) by liamtimms)

edit: The following is no longer needed for nipype>=1.5.0 with rdflib>=5.0.0!

Important note to anyone attempting to use this package: there is an issue with dependencies which requires manual intervention. https://github.com/nipy/nipype/issues/3055 due to this, Nipype may install without issue but fail when running workflows. The workaround is as follows; 1) install python-prov as you would a normal AUR package, this will call the python-rdflib dependency, 2) make the python-neurdflib package with makepkg -s, 3) use the normally not recommended --overwrite /usr/lib/python* python-neurdflib*.pkg.tar.xz flag on pacman -U to force neurdflib to install its additions over rdflib, 4) install python-nipype. This is the unfortunate state until rdflib responds to the neurdflib pull request and may cause issues in the future.

fishburn commented on 2018-03-12 15:26 (UTC)

@wedjat Thanks. No plans to create anymore nipy packages in the near future. Feel free to add!

wedjat commented on 2018-03-11 09:23 (UTC)

Thanks for uploading this and nilearn! I thought of making them myself and submitting next week. Are you planning on adding the rest of nipy packges, like nitime, dipy etc.?