Package Details: fsl 6.0.7.7-1

Git Clone URL: https://aur.archlinux.org/fsl.git (read-only, click to copy)
Package Base: fsl
Description: A comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data
Upstream URL: http://www.fmrib.ox.ac.uk/fsl/
Licenses: custom
Submitter: fishburn
Maintainer: tobac
Last Packager: tobac
Votes: 12
Popularity: 0.000000
First Submitted: 2012-07-02 23:36 (UTC)
Last Updated: 2024-03-03 11:32 (UTC)

Dependencies (1)

Required by (4)

Sources (1)

Latest Comments

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fishburn commented on 2018-11-14 16:13 (UTC)

I'm abandoning this until they adopt a typical build system (e.g., automake, cmake). Best of luck

VP1 commented on 2018-11-14 07:12 (UTC)

Hi, I tried installing this on my Antergos system. It was not able to install the vtk6 dependency. So, I got the latest vtk package (v8.1.1 community package) installed and linked that in the FSL pkgbuild file. It began installation but aborted from an error in making mist-clean. As per build.log: !!ERROR in BUILD!! Could not make the following projects successfully: mist-clean

Please help resolve this. Thanks!

gbs commented on 2018-06-16 19:58 (UTC)

Just a heads-up that I changed the vtk6 library suffix, and you might want to update your externallibs.mk to match.

fishburn commented on 2018-05-04 15:47 (UTC)

Updated to 5.0.11. I'm now bundling the scripts that were removed in this version.

tobac commented on 2018-05-02 21:24 (UTC)

Oh, that's strange. I'm on the FSL mailing list and haven't had any trouble subscribing.

fishburn commented on 2018-05-02 21:21 (UTC)

@tobac There appear to be some key files missing (imcp, etc). The build succeeds but then the check fails. I tried joining the FSL mailing list to let them know, but haven't had any luck getting on there.

tobac commented on 2018-05-02 17:24 (UTC)

Is there a reason you won't bump to 5.0.11?

fishburn commented on 2018-04-16 17:26 (UTC)

@dvogel @jnvandermeer @hottea

Build is working for me with only VTK 6 installed. The headers for VTK 6 are located in /opt/vtk6/include/vtk/. This is the path that I have specified in the externallibs.mk file that I have included in the package. My current thinking is that my .mk files weren't getting copied over for some people, so I have modified the PKGBUILD to hopefully remedy this.

Please let me know if you still get errors and what they are. Thanks.

hottea commented on 2018-04-16 11:17 (UTC)

@jnvandermeer Yeah, I think it relates to a VTK versioning issue. If you look at the fsl/config/linux_64-gcc4.8/externallibs.mk, you could see:

VTKDIR_INC = /home/fs0/cowboy/var/caper_linux_64-gcc4.4/VTK7/include/vtk-7.0
VTKDIR_LIB = /home/fs0/cowboy/var/caper_linux_64-gcc4.4/VTK7/lib
VTKSUFFIX = -7.0

It might suggest that fsl needs vtk 7, so I installed vtk 7 from Arch Linux Archive, and then built fsl. It works great. Maybe one could upload a PKGBUILD for package vtk7?

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