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Package Details: python-scikit-image 0.19.3-1
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Git Clone URL: | https://aur.archlinux.org/python-scikit-image.git (read-only, click to copy) |
---|---|
Package Base: | python-scikit-image |
Description: | Image processing routines for SciPy |
Upstream URL: | http://scikit-image.org |
Licenses: | BSD |
Submitter: | Dragonlord |
Maintainer: | Universebenzene |
Last Packager: | Universebenzene |
Votes: | 63 |
Popularity: | 0.38 |
First Submitted: | 2016-04-30 10:32 (UTC) |
Last Updated: | 2022-06-24 08:01 (UTC) |
Dependencies (35)
- python-imageio
- python-networkx (python-networkx-1.11, python-networkx-git)
- python-numpy (python-numpy-mkl, python-numpy-git, python-numpy-openblas, python-numpy-mkl-bin)
- python-packaging
- python-pillow (python-pillow-git, python-pillow-simd)
- python-pywavelets
- python-scipy (python-scipy-mkl, python-scipy-mkl-bin, python-scipy-git)
- python-tifffile
- cython (cython-git, cython3) (make)
- python-build (make)
- python-installer (python-installer-git) (make)
- python-packaging (make)
- python-pythran (python-pythran-git) (make)
- python-setuptools (make)
- python-wheel (make)
- python-matplotlib (python-matplotlib-git) (check)
- python-pooch (check)
- python-pyqt5 (python-pyqt5-sip4) (check)
- python-pytest (check)
- Show 16 more dependencies...
Required by (73)
- caffe (optional)
- caffe-cmake-git
- caffe-cuda (optional)
- caffe-cuda-git (optional)
- caffe-git (optional)
- caffe-opencl-git
- caffe-ssd (optional)
- caffe2 (optional)
- caffe2-cuda (optional)
- caffe2-cuda-git (optional)
- caffe2-git (optional)
- fawkes-git
- fluxvis
- mathics (optional)
- monailabel
- napari
- ncsdk
- paddleocr-git
- python-acstools (optional)
- python-astroalign
Latest Comments
Moebius14 commented on 2022-06-24 03:19 (UTC)
I got no such file error when it tries to create symbolic links.
The solution was to change line 67 in the PKGBUILD to:
VorpalGun commented on 2022-06-10 13:12 (UTC)
I believe the PKGBUILD can at least be fixed to pass
-j
with a numeric value extracted from$MAKEFLAGS
to build_ext (as it also seems to build single threaded), I'm less sure of how to properly fix distcc support though.carlosal1015 commented on 2022-06-08 19:48 (UTC)
@VorpalGun, maybe you want to try
arch4edu
.I saw some pytests are not passing. Compilation is fine.
VorpalGun commented on 2022-06-08 18:25 (UTC)
Building with distcc seems broken for this package. It completely ignores distcc. And it takes a long time to build as well :(
trougnouf commented on 2021-12-30 10:50 (UTC) (edited on 2021-12-30 10:51 (UTC) by trougnouf)
I updated and adopted python-pythran-git.
edit: I didn't realize python-pythran is in the official repository. I don't know why pacaur was throwing this error.
trougnouf commented on 2021-12-30 10:31 (UTC) (edited on 2021-12-30 10:34 (UTC) by trougnouf)
Missing dependency: python-pythran . Here is the last PKGBUILD before the package was removed: https://aur.archlinux.org/cgit/aur.git/tree/PKGBUILD?h=python-pythran-git
maverick1 commented on 2021-06-09 08:25 (UTC)
I think it is better to switch to this URL https://github.com/scikit-image/scikit-image/archive/refs/tags/v0.18.1.tar.gz
daniel_shub commented on 2021-03-18 14:25 (UTC)
The python-setuptools package is pulled in by python-coverage which is pulled in by python-pytest-cov. The python-pytest-cov is in checkdepends, but not makedepends. I think this means makepkg will fail with the --nocheck option. The PKGBUILD guideline wiki (https://wiki.archlinux.org/index.php/Arch_package_guidelines) doesn't cover what to do in this case and namcap is useless for Python packages so I asked in the forums: https://bbs.archlinux.org/viewtopic.php?pid=1962482#p1962482
CyberShadow commented on 2021-03-18 07:15 (UTC)
Missing dependency to python-setuptools?
Universebenzene commented on 2021-02-10 02:21 (UTC)
@selion
python-pywavelets
is already in depends. I don't know why you get this problem. And also I don't know why you created a deletion request.selion commented on 2021-02-09 22:48 (UTC) (edited on 2021-02-09 22:49 (UTC) by selion)
I get a module not found error
pywt
when importingskimage.filters
Installing
python-pywavelets
fixes thatricot commented on 2020-10-27 11:18 (UTC)
Build seems to only use a single CPU core and hence is excruciatingly slow. Any chance we could use multiple cores?
df8oe commented on 2020-06-23 10:42 (UTC)
No install possible - what is the problem?
======================================================================================= short test summary info ======================================================================================= FAILED skimage/color/tests/test_colorconv.py::TestColorconv::test_lab_full_gamut - ValueError: Unexpected warning: Converting
np.inexact
ornp.floating
to a dtype is deprecated. The current re... FAILED skimage/color/tests/test_colorconv.py::TestColorconv::test_rgb2gray_alpha - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The current re... FAILED skimage/color/tests/test_colorconv.py::test_nD_gray_conversion[shape0-rgb2gray] - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The curr... FAILED skimage/color/tests/test_colorconv.py::test_nD_gray_conversion[shape2-rgb2gray] - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The curr... FAILED skimage/color/tests/test_colorconv.py::test_nD_gray_conversion[shape3-rgb2gray] - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The curr... FAILED skimage/color/tests/test_colorconv.py::test_nD_gray_conversion[shape4-rgb2gray] - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The curr... FAILED skimage/feature/tests/test_corner.py::test_shape_index - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The current result isfloat64
w... FAILED skimage/filters/tests/test_gaussian.py::test_multichannel - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The current result isfloat64... FAILED skimage/filters/tests/test_ridges.py::test_border_warning[sato] - ValueError: Unexpected warning: Converting
np.inexactor
np.floatingto a dtype is deprecated. The current result is
f... FAILED skimage/filters/tests/test_ridges.py::test_border_warning[hessian] - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The current result is... FAILED skimage/io/tests/test_pil.py::test_all_color - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The current result isfloat64
which is no... FAILED skimage/io/tests/test_pil.py::test_all_mono - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The current result isfloat64
which is not... FAILED skimage/restoration/tests/test_denoise.py::test_denoise_bilateral_nan - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The current result... FAILED skimage/segmentation/tests/test_active_contour_model.py::test_bc_deprecation - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The current... FAILED skimage/segmentation/tests/test_active_contour_model.py::test_xy_coord_warning - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The curre... FAILED skimage/segmentation/tests/test_random_walker.py::test_2d_bf - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The current result isfloa... FAILED skimage/segmentation/tests/test_random_walker.py::test_2d_cg - ValueError: Unexpected warning: Converting
np.inexactor
np.floatingto a dtype is deprecated. The current result is
floa... FAILED skimage/segmentation/tests/test_random_walker.py::test_2d_cg_mg - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The current result isf... FAILED skimage/segmentation/tests/test_random_walker.py::test_2d_cg_j - ValueError: Unexpected warning: Converting
np.inexactor
np.floatingto a dtype is deprecated. The current result is
fl... FAILED skimage/segmentation/tests/test_random_walker.py::test_types - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The current result isfloa... FAILED skimage/segmentation/tests/test_random_walker.py::test_reorder_labels - ValueError: Unexpected warning: Converting
np.inexactor
np.floatingto a dtype is deprecated. The current result... FAILED skimage/segmentation/tests/test_random_walker.py::test_2d_inactive - ValueError: Unexpected warning: Converting
np.inexactor
np.floatingto a dtype is deprecated. The current result is... FAILED skimage/segmentation/tests/test_random_walker.py::test_3d - ValueError: Unexpected warning: Converting
np.inexactor
np.floatingto a dtype is deprecated. The current result is
float64... FAILED skimage/segmentation/tests/test_random_walker.py::test_3d_inactive - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The current result is... FAILED skimage/segmentation/tests/test_random_walker.py::test_multispectral_2d - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The current resu... FAILED skimage/segmentation/tests/test_random_walker.py::test_multispectral_3d - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The current resu... FAILED skimage/segmentation/tests/test_random_walker.py::test_spacing_0 - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The current result is... FAILED skimage/segmentation/tests/test_random_walker.py::test_spacing_1 - ValueError: Unexpected warning: Converting
np.inexactor
np.floatingto a dtype is deprecated. The current result is
... FAILED skimage/segmentation/tests/test_random_walker.py::test_trivial_cases - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The current result ... FAILED skimage/segmentation/tests/test_random_walker.py::test_length2_spacing - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The current resul... FAILED skimage/segmentation/tests/test_random_walker.py::test_isolated_seeds - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The current result... FAILED skimage/transform/tests/test_radon_transform.py::test_radon_circle - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The current result is... FAILED skimage/transform/tests/test_warps.py::test_swirl - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The current result isfloat64
which ... FAILED skimage/transform/tests/test_warps.py::test_downsize_anti_aliasing_invalid_stddev - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The cu... FAILED skimage/transform/tests/test_warps.py::test_boll_array_warnings - ValueError: Unexpected warning: Convertingnp.inexact
ornp.floating
to a dtype is deprecated. The current result is `f... =============================================================== 35 failed, 6046 passed, 16 skipped, 18562 warnings in 264.40s (0:04:24) =============================================================== ==> FEHLER: Ein Fehler geschah in check(). Breche ab... error making: %!s(func() string=0x55f0a2e2aed0)jdc commented on 2020-04-14 16:55 (UTC)
I'm getting an error when I try to import
skimage.io
.https://hastebin.com/wukepifuxo.sql
dburkhardt commented on 2019-05-17 13:52 (UTC)
I'm getting a conflicting package error when I shouldn't be:
But python-scipy-openblas is listed as sufficient in the Dependencies table. What's going on?
Universebenzene commented on 2019-03-07 14:08 (UTC)
@bertptrs Fine, so I bring back the
build()
function now. Thanks!bertptrs commented on 2019-03-07 13:58 (UTC) (edited on 2019-03-07 14:00 (UTC) by bertptrs)
You are right on the
prepare()
part; I've misread the diff. And while the package builds fine, the problem of compiling inpackage_*()
is more of a semantic one. Some packages (quite a few unfortunately) compile source code in theprepare()
phase, but this is incorrect. Most python packages only need to byte-compile all of their.py
files. For this package it is especially noticeable as there is a lot of actual native code compilation.The correct way to do it is: have a
build()
that callspython(2) setup.py build
for both versions, and then in eachpackage_
function callpython(2) setup.py install …
. Thepackage
function really should only be moving files from here to there. Just because you can compile the packages there doesn't mean you should. One might want to inspect the created binaries before creating a package, for example, or really just any use ofmakepkg --repackage
.You can see an example in the PKGBUILD for numpy: https://git.archlinux.org/svntogit/packages.git/tree/trunk/PKGBUILD?h=packages/python-numpy (and also the previous versions of this package)
Universebenzene commented on 2019-03-07 13:12 (UTC) (edited on 2019-03-07 13:13 (UTC) by Universebenzene)
Hi @bertptrs, actually I don't have
build()
function in the PKGBUILD, and I am modifying the source code inprepare()
function , notbuild()
. In fact for most python packages, thepython setup.py install
does the build at the same time, so we don't really need anotherbuild()
for them. The package builds well on my PCs, so could you please tell me what kinds of errors occur on yours? Thanks for feedback.bertptrs commented on 2019-03-07 12:45 (UTC)
Hi, I see you modified the PKGBUILD quite a bit, and with it introduced some errors. Would you mind going back to the old style?
Currently, it modifies source code in
build()
rather thanprepare()
and also compiles code inpackage()
rather than inbuild()
. Both are bad practices, and the PKGBUILD did this correctly before the latest commit. Please see https://wiki.archlinux.org/index.php/Python_package_guidelinesDragonlord commented on 2019-03-05 20:24 (UTC)
Package disowned.
Universebenzene commented on 2019-02-27 12:42 (UTC) (edited on 2019-02-27 13:25 (UTC) by Universebenzene)
The PKGBUILD produced by @greyltc works well. Are you still maintaining this package? If you got any problem, we can discuss here, or please update this package ASAP. This package is related to several other packages, so if you don't update it to 0.14.2, they may all get problems.
versusvoid commented on 2019-01-29 10:02 (UTC)
Please, split PKGBUILD into two distinct packages, so I would not have to install all the python2 dependencies just to build python2 version, when I have no need for it in the first place. It would build faster, download less, there will be peace on Earth and everyone will be happy. Yeah, it would mean duplicating some common fields across two PKGBUILDs, but IMO it worth the gain.
greyltc commented on 2019-01-28 12:11 (UTC)
Fixed PKGBUILD is here: https://gist.githubusercontent.com/greyltc/757e3960127db07ed4d19c1f5c38b30f/raw/43ef5cb5abbc2c199be88eba49d1f69376431541/PKGBUILD
greyltc commented on 2019-01-27 14:32 (UTC)
Today this doesn't import because:
Looks like https://github.com/scikit-image/scikit-image/issues/3586
I think a fix for this should be in the 0.14.2 release so please update asap!
andrew-wja commented on 2019-01-18 15:41 (UTC)
When I try to import the library:
ImportError: /usr/lib/python3.7/site-packages/skimage/restoration/_nl_means_denoising.cpython-37m-x86_64-linux-gnu.so: undefined symbol: fast_exp
salviati commented on 2018-10-06 15:14 (UTC)
Build fails with ==> Validating source files with sha256sums... scikit-image-0.14.1.tar.gz ... FAILED ==> ERROR: One or more files did not pass the validity check!
tocic commented on 2018-10-06 05:47 (UTC)
+1, please update
rdoursenaud commented on 2018-10-02 08:19 (UTC)
The GitHub file has been updated for v0.14.1 making the sha256sum invalid.
zhou13 commented on 2018-09-17 08:01 (UTC)
I also hope this the python3 version of this package only relies on python3 library.
Pastafarianist commented on 2018-09-16 20:34 (UTC)
Seconding @migueldvb, can only Python 3 dependencies be built for the
python-scikit-image
package?tsj commented on 2018-07-20 22:59 (UTC) (edited on 2018-07-20 23:00 (UTC) by tsj)
I think python-dask needs to be a dependency.
import skimage.filters
complains that thedask
module is missing.python-dask depends on python-sparse which seems to have some bug, you have to disable the check step in the PKGBUILD.
davidmcinnis commented on 2017-07-28 03:56 (UTC) (edited on 2017-07-28 03:56 (UTC) by davidmcinnis)
b52 commented on 2017-07-21 11:45 (UTC)
shadeless commented on 2017-07-07 15:29 (UTC)
drawm commented on 2017-04-29 16:07 (UTC)
stick commented on 2017-04-09 18:52 (UTC)
gypaetus commented on 2017-03-27 22:11 (UTC)
daniel_shub commented on 2016-09-09 20:48 (UTC)
schmodd commented on 2016-08-26 13:49 (UTC)
Dragonlord commented on 2016-08-21 17:44 (UTC)
schmodd commented on 2016-08-21 11:20 (UTC)
soupault commented on 2016-07-22 06:09 (UTC) (edited on 2016-07-22 06:09 (UTC) by soupault)
soupault commented on 2016-07-21 18:54 (UTC) (edited on 2016-07-22 06:10 (UTC) by soupault)
anntzer commented on 2016-07-21 18:46 (UTC)
soupault commented on 2016-05-19 19:22 (UTC)
giniu commented on 2016-05-08 14:11 (UTC)