r-ternary
|
2.3.1-2 |
0 |
0.00
|
Create Ternary and Holdridge Plots |
malacology
|
2024-02-23 00:04 (UTC) |
r-treedist
|
2.7.0-2 |
0 |
0.00
|
Calculate and Map Distances Between Phylogenetic Trees |
malacology
|
2024-02-23 00:03 (UTC) |
rasp
|
4.2-1 |
0 |
0.00
|
Reconstruct Ancestral State in Phylogenies is a tool for inferring ancestral state |
malacology
|
2021-05-10 08:12 (UTC) |
raxml-light
|
1.0.9-1 |
0 |
0.00
|
A tool for computing terabyte phylogenies https://doi.org/10.1093/bioinformatics/bts309 |
malacology
|
2022-08-29 01:53 (UTC) |
raxml-ng
|
1.2.2-1 |
1 |
0.00
|
A phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion. https://doi.org/10.1093/bioinformatics/btz305 |
malacology
|
2024-05-01 00:07 (UTC) |
raxml-ng-mpi
|
1.2.2-1 |
0 |
0.00
|
A phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion. https://doi.org/10.1093/bioinformatics/btz305 |
malacology
|
2024-05-01 00:06 (UTC) |
raxmlgui
|
2.0.10-2 |
1 |
0.00
|
A new user-friendly program integrating RAxML-NG and ModelTest-NG for cutting-edge phylogenetic analysis. https://doi.org/10.1111/2041-210X.13512 |
malacology
|
2023-12-05 00:03 (UTC) |
revbayes
|
1.2.4-2 |
1 |
0.00
|
Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language https://doi.org/10.1093/sysbio/syw021 |
malacology
|
2024-06-07 18:43 (UTC) |
revbayes-mpi
|
1.2.4-2 |
1 |
0.00
|
Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language https://doi.org/10.1093/sysbio/syw021 |
malacology
|
2024-06-07 18:22 (UTC) |
rockpix-ap6255
|
1.0-1 |
0 |
0.00
|
WiFi & BT Firmware patch for ROCK PI X |
malacology
|
2024-03-17 18:19 (UTC) |
seaview
|
5.0.5-8 |
11 |
0.00
|
GUI for multiple sequence alignment and molecular phylogeny. https://doi.org/10.1093/molbev/msp259 |
malacology
|
2022-09-03 01:59 (UTC) |
seqan3
|
3.3.0-1 |
0 |
0.00
|
The modern C++ library for sequence analysis https://doi.org/10.1016/j.jbiotec.2017.07.017 |
malacology
|
2023-10-06 15:14 (UTC) |
seqcombgo
|
0.0.1-1 |
0 |
0.00
|
Sequence Combination tool written in Golang |
malacology
|
2022-01-18 17:47 (UTC) |
seqcombgo-bin
|
0.0.1-1 |
0 |
0.00
|
Sequence Combination tool written in Golang |
malacology
|
2022-01-18 17:46 (UTC) |
seqcombgo-git
|
r61.7abdfcb-1 |
0 |
0.00
|
Sequence Combination tool written in Golang |
malacology
|
2022-01-18 17:43 (UTC) |
seqdistk
|
1.0-2 |
0 |
0.00
|
tools to calculate the distance among sequence |
malacology
|
2023-04-04 19:09 (UTC) |
seqlib
|
1.2.0-12 |
0 |
0.00
|
C++ htslib/bwa-mem/fermi interface for interrogating sequence data |
malacology
|
2024-01-23 00:11 (UTC) |
sequencematrix
|
1.9-6 |
1 |
0.00
|
Taxonomy-aware DNA sequence processing toolkit |
malacology
|
2022-12-04 01:53 (UTC) |
sfa-spa
|
0.2.1-0 |
0 |
0.00
|
A short peptide assembler for metagenomic data https://doi.org/10.1093/nar/gkt118 |
malacology
|
2023-03-04 19:13 (UTC) |
slf-wt
|
2014.03.10-0 |
0 |
0.00
|
A prototype program implementing character state reconstructions under non-lineal functions of the state changes (Pee-Wee with SeLF-WeighTed) https://doi.org/10.1006/clad.1997.0043 |
malacology
|
2023-07-29 17:57 (UTC) |
smartdenovo
|
2021.02.24-1 |
0 |
0.00
|
About Ultra-fast de novo assembler using long noisy reads |
malacology
|
2023-02-09 11:45 (UTC) |
soapnuke
|
2.1.9-1 |
0 |
0.00
|
A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files http://dx.doi.org/10.5524/100361 |
malacology
|
2024-03-28 18:01 (UTC) |
spa
|
2014.03.10-0 |
0 |
0.00
|
Sankoff Parsimony Analysis https://doi.org/10.1006/clad.1998.0068 |
malacology
|
2023-07-29 17:57 (UTC) |
speciesidentifier
|
1.9-6 |
1 |
0.00
|
Taxonomy-aware DNA sequence processing toolkit |
malacology
|
2022-12-04 01:53 (UTC) |
spread
|
1.0.7-6 |
0 |
0.00
|
a user-friendly application to analyze and visualize phylogeographic reconstructions resulting from Bayesian inference of spatio-temporal diffusion. https://doi.org/10.1093/bioinformatics/btr481 |
malacology
|
2023-05-06 15:46 (UTC) |
spread3
|
1:0.9.5-1 |
0 |
0.00
|
a user-friendly application to analyze and visualize pathogen phylodynamic reconstructions resulting from Bayesian inference of sequence and trait evolutionary processes. https://doi.org/10.1093/molbev/msw082 |
malacology
|
2023-04-28 05:27 (UTC) |
stringtie
|
2.2.3-1 |
0 |
0.00
|
A fast and highly efficient assembler of RNA-Seq alignments into potential transcripts |
malacology
|
2024-05-08 06:01 (UTC) |
tabixpp
|
1.1.2-1 |
0 |
0.00
|
C++ wrapper to tabix indexer |
malacology
|
2023-01-19 18:01 (UTC) |
tempest-bin
|
1.5.3-1 |
0 |
0.00
|
a tool for investigating the temporal signal and 'clocklikeness' of molecular phylogenies |
malacology
|
2021-05-27 05:31 (UTC) |
tiger1
|
1.02-1 |
0 |
0.00
|
Identifying rapidly-evolving characters in evolutionary data |
malacology
|
2021-06-20 13:43 (UTC) |
tn93
|
.1.0.13.actual-1 |
0 |
0.00
|
TN93 fast distance calculator |
malacology
|
2024-01-08 18:02 (UTC) |
tnt-bio
|
1.6-1 |
1 |
0.00
|
Tree analysis using New Technology. https://doi.org/10.1111/cla.12160 |
malacology
|
2023-04-24 06:47 (UTC) |
tnt-extra
|
1.6-1 |
1 |
0.00
|
Tree analysis using New Technology. https://doi.org/10.1111/cla.12160 |
malacology
|
2023-04-24 06:47 (UTC) |
tnt-gui
|
1.6-1 |
1 |
0.00
|
Tree analysis using New Technology. https://doi.org/10.1111/cla.12160 |
malacology
|
2023-04-24 06:47 (UTC) |
tnt-mpi
|
1.6-1 |
1 |
0.00
|
Tree analysis using New Technology. https://doi.org/10.1111/cla.12160 |
malacology
|
2023-04-24 06:47 (UTC) |
tophat
|
2.1.2-3 |
10 |
0.00
|
fast splice junction mapper for RNA-Seq reads |
malacology
|
2023-06-01 21:28 (UTC) |
tpsdig
|
2021.6.3-1 |
0 |
0.00
|
Digitize landmarks & outlines from image files, scanner, or video |
malacology
|
2023-01-03 00:01 (UTC) |
tpsrelw
|
1.74-1 |
0 |
0.00
|
Relative warps analysis |
malacology
|
2022-03-25 02:21 (UTC) |
tpsutil
|
2023.03.04-1 |
0 |
0.00
|
tps file utility program |
malacology
|
2023-03-05 06:04 (UTC) |
tracer-bin
|
1.7.2-1 |
1 |
0.00
|
Posterior summarisation in Bayesian phylogenetics |
malacology
|
2022-10-14 07:13 (UTC) |
tracy-bin
|
0.6.1-1 |
0 |
0.00
|
Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files |
malacology
|
2021-11-19 02:04 (UTC) |
tree-puzzle
|
5.3.rc16-1 |
0 |
0.00
|
Maximum likelihood analysis for nucleotide, amino acid, and two-state data |
malacology
|
2024-02-04 16:40 (UTC) |
treemap
|
3b1243-7 |
0 |
0.00
|
a tool for analysing relationships between evolutionary histories of ecologically linked species |
malacology
|
2024-01-22 06:01 (UTC) |
treeviewx
|
0.5.0-1 |
0 |
0.00
|
Program to display phylogenetic trees |
malacology
|
2023-02-05 09:33 (UTC) |
trinityrnaseq
|
2.15.1-2 |
0 |
0.00
|
Transcriptome assembler for RNA-seq reads https://doi.org/10.1038%2Fnbt.1883 |
malacology
|
2024-06-04 03:42 (UTC) |
trinityrnaseq-doc
|
2.15.1-2 |
0 |
0.00
|
Transcriptome assembler for RNA-seq reads https://doi.org/10.1038%2Fnbt.1883 |
malacology
|
2024-06-04 03:42 (UTC) |
trinityrnaseq-extra
|
2.15.1-2 |
0 |
0.00
|
Transcriptome assembler for RNA-seq reads https://doi.org/10.1038%2Fnbt.1883 |
malacology
|
2024-06-04 03:42 (UTC) |
typecho
|
1.2.1-1 |
1 |
0.00
|
A PHP Blogging Platform |
malacology
|
2023-10-06 15:08 (UTC) |
vcflib
|
1.0.10-1 |
0 |
0.00
|
C++ library and cmdline tools for parsing and manipulating VCF files doi: 10.1101/2021.05.21.445151 |
malacology
|
2024-04-20 12:05 (UTC) |
wf-ctrl-git
|
r10.d63ab76-1 |
0 |
0.00
|
A wayfire plugin and program to control wayfire surfaces and desktop |
malacology
|
2022-08-15 20:25 (UTC) |