preseq
|
3.2.0-3 |
0 |
0.00
|
A tool for predicting and estimating the complexity of a genomic sequencing library, equivalent to predicting and estimating the number of redundant reads from a given sequencing depth. |
malacology
|
2023-07-26 18:17 (UTC) |
pvm
|
3.4.6-10 |
12 |
0.00
|
Parallel Virtual Machine |
malacology
|
2022-10-20 12:01 (UTC) |
python-dendropy
|
4.6.1-1 |
0 |
0.00
|
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters. |
malacology
|
2023-06-09 06:02 (UTC) |
python-ete3
|
3.1.3-1 |
1 |
0.00
|
A Python Environment for (phylogenetic) Tree Exploration |
malacology
|
2023-05-02 12:02 (UTC) |
r-ecoindr
|
2.0-2 |
0 |
0.00
|
Ecological Indicators |
malacology
|
2024-03-06 00:05 (UTC) |
r-fd
|
1.0.12.3-2 |
0 |
0.00
|
Measuring Functional Diversity (FD) from Multiple Traits, and Other Tools for Functional Ecology |
malacology
|
2024-03-06 00:05 (UTC) |
r-genepop
|
1.2.2-1 |
0 |
0.00
|
Population Genetic Data Analysis Using Genepop |
malacology
|
2024-03-05 00:01 (UTC) |
r-geoscale
|
2.0.1-2 |
0 |
0.00
|
Geological Time Scale Plotting |
malacology
|
2024-02-23 00:01 (UTC) |
r-protoclust
|
1.6.4-2 |
0 |
0.00
|
Hierarchical Clustering with Prototypes |
malacology
|
2024-02-23 00:01 (UTC) |
r-quartet
|
1.2.6-2 |
0 |
0.00
|
Comparison of Phylogenetic Trees Using Quartet and Split Measures |
malacology
|
2024-02-23 00:06 (UTC) |
r-rarity
|
1.3.8-2 |
0 |
0.00
|
Calculation of Rarity Indices for Species and Assemblages of Species |
malacology
|
2024-03-06 00:01 (UTC) |
r-rcpphungarian
|
0.3-2 |
0 |
0.00
|
Solves Minimum Cost Bipartite Matching Problems |
malacology
|
2024-02-23 00:02 (UTC) |
r-rogue
|
2.1.6-2 |
0 |
0.00
|
Identify Rogue Taxa in Sets of Phylogenetic Trees |
malacology
|
2024-02-23 00:05 (UTC) |
r-strap
|
1.6.1-1 |
0 |
0.00
|
Stratigraphic Tree Analysis for Palaeontology |
malacology
|
2024-05-06 12:17 (UTC) |
r-tbrdist
|
1.0.2-2 |
0 |
0.00
|
Rearrangement Distances Between Unrooted Phylogenetic Trees |
malacology
|
2024-02-23 00:05 (UTC) |
r-ternary
|
2.3.1-2 |
0 |
0.00
|
Create Ternary and Holdridge Plots |
malacology
|
2024-02-23 00:04 (UTC) |
r-treedist
|
2.7.0-2 |
0 |
0.00
|
Calculate and Map Distances Between Phylogenetic Trees |
malacology
|
2024-02-23 00:03 (UTC) |
rasp
|
4.2-1 |
0 |
0.00
|
Reconstruct Ancestral State in Phylogenies is a tool for inferring ancestral state |
malacology
|
2021-05-10 08:12 (UTC) |
raxml-light
|
1.0.9-1 |
0 |
0.00
|
A tool for computing terabyte phylogenies https://doi.org/10.1093/bioinformatics/bts309 |
malacology
|
2022-08-29 01:53 (UTC) |
raxml-ng
|
1.2.2-1 |
1 |
0.00
|
A phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion. https://doi.org/10.1093/bioinformatics/btz305 |
malacology
|
2024-05-01 00:07 (UTC) |
raxml-ng-mpi
|
1.2.2-1 |
0 |
0.00
|
A phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion. https://doi.org/10.1093/bioinformatics/btz305 |
malacology
|
2024-05-01 00:06 (UTC) |
raxmlgui
|
2.0.10-2 |
1 |
0.00
|
A new user-friendly program integrating RAxML-NG and ModelTest-NG for cutting-edge phylogenetic analysis. https://doi.org/10.1111/2041-210X.13512 |
malacology
|
2023-12-05 00:03 (UTC) |
revbayes
|
1.2.4-2 |
1 |
0.00
|
Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language https://doi.org/10.1093/sysbio/syw021 |
malacology
|
2024-06-07 18:43 (UTC) |
revbayes-mpi
|
1.2.4-2 |
1 |
0.00
|
Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language https://doi.org/10.1093/sysbio/syw021 |
malacology
|
2024-06-07 18:22 (UTC) |
rockpix-ap6255
|
1.0-1 |
0 |
0.00
|
WiFi & BT Firmware patch for ROCK PI X |
malacology
|
2024-03-17 18:19 (UTC) |
seaview
|
5.0.5-8 |
11 |
0.00
|
GUI for multiple sequence alignment and molecular phylogeny. https://doi.org/10.1093/molbev/msp259 |
malacology
|
2022-09-03 01:59 (UTC) |
seqan3
|
3.3.0-1 |
0 |
0.00
|
The modern C++ library for sequence analysis https://doi.org/10.1016/j.jbiotec.2017.07.017 |
malacology
|
2023-10-06 15:14 (UTC) |
seqcombgo
|
0.0.1-1 |
0 |
0.00
|
Sequence Combination tool written in Golang |
malacology
|
2022-01-18 17:47 (UTC) |
seqcombgo-bin
|
0.0.1-1 |
0 |
0.00
|
Sequence Combination tool written in Golang |
malacology
|
2022-01-18 17:46 (UTC) |
seqcombgo-git
|
r61.7abdfcb-1 |
0 |
0.00
|
Sequence Combination tool written in Golang |
malacology
|
2022-01-18 17:43 (UTC) |
seqdistk
|
1.0-2 |
0 |
0.00
|
tools to calculate the distance among sequence |
malacology
|
2023-04-04 19:09 (UTC) |
seqlib
|
1.2.0-12 |
0 |
0.00
|
C++ htslib/bwa-mem/fermi interface for interrogating sequence data |
malacology
|
2024-01-23 00:11 (UTC) |
sequencematrix
|
1.9-6 |
1 |
0.00
|
Taxonomy-aware DNA sequence processing toolkit |
malacology
|
2022-12-04 01:53 (UTC) |
sfa-spa
|
0.2.1-0 |
0 |
0.00
|
A short peptide assembler for metagenomic data https://doi.org/10.1093/nar/gkt118 |
malacology
|
2023-03-04 19:13 (UTC) |
slf-wt
|
2014.03.10-0 |
0 |
0.00
|
A prototype program implementing character state reconstructions under non-lineal functions of the state changes (Pee-Wee with SeLF-WeighTed) https://doi.org/10.1006/clad.1997.0043 |
malacology
|
2023-07-29 17:57 (UTC) |
smartdenovo
|
2021.02.24-1 |
0 |
0.00
|
About Ultra-fast de novo assembler using long noisy reads |
malacology
|
2023-02-09 11:45 (UTC) |
soapnuke
|
2.1.9-1 |
0 |
0.00
|
A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files http://dx.doi.org/10.5524/100361 |
malacology
|
2024-03-28 18:01 (UTC) |
spa
|
2014.03.10-0 |
0 |
0.00
|
Sankoff Parsimony Analysis https://doi.org/10.1006/clad.1998.0068 |
malacology
|
2023-07-29 17:57 (UTC) |
speciesidentifier
|
1.9-6 |
1 |
0.00
|
Taxonomy-aware DNA sequence processing toolkit |
malacology
|
2022-12-04 01:53 (UTC) |
spread
|
1.0.7-6 |
0 |
0.00
|
a user-friendly application to analyze and visualize phylogeographic reconstructions resulting from Bayesian inference of spatio-temporal diffusion. https://doi.org/10.1093/bioinformatics/btr481 |
malacology
|
2023-05-06 15:46 (UTC) |
spread3
|
1:0.9.5-1 |
0 |
0.00
|
a user-friendly application to analyze and visualize pathogen phylodynamic reconstructions resulting from Bayesian inference of sequence and trait evolutionary processes. https://doi.org/10.1093/molbev/msw082 |
malacology
|
2023-04-28 05:27 (UTC) |
stringtie
|
2.2.3-1 |
0 |
0.00
|
A fast and highly efficient assembler of RNA-Seq alignments into potential transcripts |
malacology
|
2024-05-08 06:01 (UTC) |
tabixpp
|
1.1.2-1 |
0 |
0.00
|
C++ wrapper to tabix indexer |
malacology
|
2023-01-19 18:01 (UTC) |
tempest-bin
|
1.5.3-1 |
0 |
0.00
|
a tool for investigating the temporal signal and 'clocklikeness' of molecular phylogenies |
malacology
|
2021-05-27 05:31 (UTC) |
tiger1
|
1.02-1 |
0 |
0.00
|
Identifying rapidly-evolving characters in evolutionary data |
malacology
|
2021-06-20 13:43 (UTC) |
tn93
|
.1.0.13.actual-1 |
0 |
0.00
|
TN93 fast distance calculator |
malacology
|
2024-01-08 18:02 (UTC) |
tnt-bio
|
1.6-1 |
1 |
0.00
|
Tree analysis using New Technology. https://doi.org/10.1111/cla.12160 |
malacology
|
2023-04-24 06:47 (UTC) |
tnt-extra
|
1.6-1 |
1 |
0.00
|
Tree analysis using New Technology. https://doi.org/10.1111/cla.12160 |
malacology
|
2023-04-24 06:47 (UTC) |
tnt-gui
|
1.6-1 |
1 |
0.00
|
Tree analysis using New Technology. https://doi.org/10.1111/cla.12160 |
malacology
|
2023-04-24 06:47 (UTC) |
tnt-mpi
|
1.6-1 |
1 |
0.00
|
Tree analysis using New Technology. https://doi.org/10.1111/cla.12160 |
malacology
|
2023-04-24 06:47 (UTC) |