morphoj
|
1.08.02-1 |
1 |
0.00
|
integrated program package for doing geometric morphometrics https://doi.org/10.1111/j.1755-0998.2010.02924.x |
malacology
|
2024-05-23 00:02 (UTC) |
mpboot
|
1.2-1 |
0 |
0.00
|
Fast phylogenetic maximum parsimony tree inference and bootstrap approximation https://doi.org/10.1186/s12862-018-1131-3 |
malacology
|
2023-02-14 12:03 (UTC) |
mpi-bucky
|
1.4.4-2 |
0 |
0.00
|
Bayesian Untangling of Concordance Knots https://doi.org/10.1093/bioinformatics/btq539 |
malacology
|
2022-08-29 18:58 (UTC) |
mptp
|
0.2.5-1 |
0 |
0.00
|
A tool for single-locus species delimitation https://doi.org/10.1093/bioinformatics/btx025 |
malacology
|
2023-09-13 00:01 (UTC) |
mrbayes-beagle
|
3.2.7-6 |
0 |
0.00
|
A program for the Bayesian estimation of phylogeny. https://doi.org/10.1093/sysbio/sys029 |
malacology
|
2022-04-23 18:37 (UTC) |
mrbayes-desktop
|
1.0-1 |
1 |
0.00
|
Desktop File For MrBayes |
malacology
|
2021-05-06 08:28 (UTC) |
mrbayes-mpi
|
3.2.7-8 |
2 |
0.00
|
MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. https://doi.org/10.1093/sysbio/sys029 |
malacology
|
2022-08-02 12:01 (UTC) |
mrbayes-mpi-beagle
|
3.2.7-15 |
0 |
0.00
|
MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. https://doi.org/10.1093/sysbio/sys029 |
malacology
|
2022-08-02 18:13 (UTC) |
mrbayes-mpi-desktop
|
1.0-1 |
1 |
0.00
|
Desktop File For MrBayes MPI |
malacology
|
2021-05-07 06:07 (UTC) |
mrmodeltest
|
2.4-1 |
0 |
0.00
|
C program for selecting DNA substitution models using PAUP* |
malacology
|
2021-12-22 20:53 (UTC) |
nona
|
2014.03.10-5 |
1 |
0.00
|
NONA: a bastard son of Pee-Wee. Phylogenetic Analysis Software |
malacology
|
2023-07-21 07:08 (UTC) |
nona-win
|
2014.03.10-0 |
0 |
0.00
|
a bastard son of Pee-Wee |
malacology
|
2023-07-29 17:57 (UTC) |
notekit
|
0.2.0-1 |
2 |
0.00
|
A GTK3 hierarchical markdown notetaking application with tablet support. |
malacology
|
2022-12-18 14:18 (UTC) |
notekit-git
|
r207.18b708d-1 |
4 |
0.00
|
A GTK3 hierarchical markdown notetaking application with tablet support. |
malacology
|
2022-06-16 12:05 (UTC) |
nudelta
|
0.7.4-1 |
0 |
0.00
|
Open source NuPhy Console alternative |
malacology
|
2023-10-11 09:38 (UTC) |
oblong
|
2014.03.10-1 |
0 |
0.00
|
A program to analyse phylogenomic data sets with millions of characters, requiring negligible amounts of RAM. https://doi.org/10.1111/cla.12056 |
malacology
|
2022-08-29 19:55 (UTC) |
open-delta
|
1:1.0.3_beta-1 |
1 |
0.00
|
DEscription Language of TAxonomy |
malacology
|
2023-04-25 19:25 (UTC) |
paml
|
4.10.7-1 |
0 |
0.00
|
Phylogenetic analysis by maximum likelihood. https://doi.org/10.1093/molbev/msm088 |
malacology
|
2023-06-29 22:48 (UTC) |
pamlx
|
1.3.1-4 |
0 |
0.00
|
A Graphical User Interface for PAML https://doi.org/10.1093/molbev/mst179 |
malacology
|
2024-02-05 17:10 (UTC) |
pars-win-extra
|
2014.03.10-0 |
0 |
0.00
|
Parsimony programs extra software from Pablo A. Goloboff |
malacology
|
2023-07-29 17:57 (UTC) |
parsimonator
|
1.0.2-2 |
0 |
0.00
|
A fast open-source parsimony program |
malacology
|
2022-08-29 02:06 (UTC) |
paup-desktop
|
1.0-1 |
1 |
0.00
|
Desktop File For PAUP* |
malacology
|
2021-05-06 08:47 (UTC) |
paup-gui
|
4.0a-1 |
0 |
0.00
|
Phylogenetic Analysis Using PAUP |
malacology
|
2021-05-11 17:00 (UTC) |
pee-wee
|
2014.03.10-0 |
0 |
0.00
|
(P)arsimony and (I)mplied (WE)ights |
malacology
|
2023-07-29 17:57 (UTC) |
phast-win
|
2014.03.10-0 |
0 |
0.00
|
PHylogenetic Analysis for Sankoff Transformations https://doi.org/10.1006/clad.1998.0068 |
malacology
|
2023-07-29 17:57 (UTC) |
phyde
|
0.9971-2 |
0 |
0.00
|
a system-independent editor for DNA and amino acid sequence alignments, designed to assist anybody interested in phylogenetic or other comparative analyses of sequence data |
malacology
|
2022-08-28 10:34 (UTC) |
phylobayes
|
4.1e-1 |
1 |
0.00
|
phylogenetic reconstruction using infinite mixtures |
malacology
|
2021-05-15 13:14 (UTC) |
phylobayes-mpi
|
1.9-1 |
1 |
0.00
|
phylogenetic reconstruction using infinite mixtures. https://doi.org/10.1093/molbev/msh112 |
malacology
|
2022-10-16 08:44 (UTC) |
phylogeography
|
1.10.4-0 |
1 |
0.00
|
BEAST PhyloGeography https://doi.org/10.1186/1471-2148-7-214 |
malacology
|
2023-05-07 11:21 (UTC) |
phylonet
|
3.8.4-3 |
0 |
0.00
|
suite of software tools for reconstructing/analyzing phylogenetic networks in the presence of reticulate evolutionary events. https://doi.org/10.1093/sysbio/syy015 |
malacology
|
2022-12-01 18:01 (UTC) |
phylonet-hmm
|
0.1-1 |
0 |
0.00
|
An HMM-based comparative genomic framework for detecting introgression in eukaryotes |
malacology
|
2021-05-27 06:12 (UTC) |
phylosuite
|
1.2.3-2 |
0 |
0.00
|
an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. https://doi.org/10.1111/1755-0998.13096 |
malacology
|
2023-04-04 19:09 (UTC) |
pibuss
|
1.10.4-0 |
1 |
0.00
|
a BEAST/BEAGLE utility for sequence simulation, which provides an easy to use interface that allows flexible and extensible phylogenetic data fabrication. https://doi.org/10.1186/1471-2105-15-133 |
malacology
|
2023-05-07 11:21 (UTC) |
picard-tools
|
3.1.1-1 |
8 |
0.00
|
set of tools for working with next generation sequencing data in the BAM format |
malacology
|
2023-11-15 00:03 (UTC) |
pid_children-git
|
r10.749d59c-1 |
0 |
0.00
|
A simple program outputs descendant process ids for each pid given on the command line |
malacology
|
2021-07-12 17:44 (UTC) |
pleroma
|
2.6.2-1 |
0 |
0.00
|
A microblogging server software that can federate other servers that support ActivityPub |
malacology
|
2024-02-22 14:16 (UTC) |
pleroma-git
|
2.5.50.2023.02.09-1 |
0 |
0.00
|
A microblogging server software that can federate other servers that support ActivityPub |
malacology
|
2023-02-11 14:41 (UTC) |
plume
|
0.7.2-2 |
0 |
0.00
|
Federated blogging application |
malacology
|
2023-02-10 08:18 (UTC) |
plume-postgres
|
0.7.2-1 |
0 |
0.00
|
Federated blogging application |
malacology
|
2022-05-25 00:54 (UTC) |
plume-sqlite
|
0.7.2-1 |
0 |
0.00
|
Federated blogging application |
malacology
|
2022-05-25 01:00 (UTC) |
popart
|
2019.07.15-6 |
0 |
0.00
|
Full-feature software for haplotype network reconstruction. https://doi.org/10.1111/2041-210X.12410 |
malacology
|
2023-07-02 18:33 (UTC) |
preseq
|
3.2.0-3 |
0 |
0.00
|
A tool for predicting and estimating the complexity of a genomic sequencing library, equivalent to predicting and estimating the number of redundant reads from a given sequencing depth. |
malacology
|
2023-07-26 18:17 (UTC) |
pvm
|
3.4.6-10 |
12 |
0.00
|
Parallel Virtual Machine |
malacology
|
2022-10-20 12:01 (UTC) |
python-dendropy
|
4.6.1-1 |
0 |
0.00
|
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters. |
malacology
|
2023-06-09 06:02 (UTC) |
python-ete3
|
3.1.3-1 |
1 |
0.00
|
A Python Environment for (phylogenetic) Tree Exploration |
malacology
|
2023-05-02 12:02 (UTC) |
r-ecoindr
|
2.0-2 |
0 |
0.00
|
Ecological Indicators |
malacology
|
2024-03-06 00:05 (UTC) |
r-fd
|
1.0.12.3-2 |
0 |
0.00
|
Measuring Functional Diversity (FD) from Multiple Traits, and Other Tools for Functional Ecology |
malacology
|
2024-03-06 00:05 (UTC) |
r-genepop
|
1.2.2-1 |
0 |
0.00
|
Population Genetic Data Analysis Using Genepop |
malacology
|
2024-03-05 00:01 (UTC) |
r-geoscale
|
2.0.1-2 |
0 |
0.00
|
Geological Time Scale Plotting |
malacology
|
2024-02-23 00:01 (UTC) |
r-protoclust
|
1.6.4-2 |
0 |
0.00
|
Hierarchical Clustering with Prototypes |
malacology
|
2024-02-23 00:01 (UTC) |