dbasic
|
0.92.0-1 |
0 |
0.00
|
Modern implementation of the original Dartmouth BASIC compilers in the D programming language |
malacology
|
2023-10-20 09:41 (UTC) |
dnarates
|
1.1.0-0 |
0 |
0.00
|
estimating site-specific nucleotide substitution rates by maximum likelihood https://doi.org/10.1093/nar/22.17.3485 |
malacology
|
2024-02-04 17:28 (UTC) |
dnastar7activated
|
7.1.0-1 |
0 |
0.00
|
leader in the field of bioinformatics software, including SeqMan Editseq GeneQuest Megalign PrimerSelect Protean SeqBuilder |
malacology
|
2021-05-13 10:00 (UTC) |
easycodeml
|
1.41-1 |
1 |
0.00
|
A visual tool for analysis of selection using CodeML. https://doi.org/10.1002/ece3.5015 |
malacology
|
2023-05-07 12:01 (UTC) |
ekho
|
8.9.3-1 |
11 |
0.00
|
Multilingual text-to-speech (TTS) software for Cantonese, Mandarin, Toisanese, Zhaoan Hakka, Tibetan, Ngangien, Korean and English |
malacology
|
2023-06-25 09:48 (UTC) |
ev-view
|
20160216.161212-2 |
0 |
0.00
|
A tool for visualization of evs results. |
malacology
|
2022-08-29 22:40 (UTC) |
evs
|
20161229.215801-3 |
0 |
0.00
|
A tool for phylogenetic biogeography |
malacology
|
2022-08-29 22:40 (UTC) |
exabayes
|
1.5.1-2 |
1 |
0.00
|
software package for Bayesian tree inference https://doi.org/10.1093/molbev/msu236 |
malacology
|
2022-08-30 12:02 (UTC) |
examl
|
3.0.22-3 |
1 |
0.00
|
Exascale Maximum Likelihood https://doi.org/10.1093/bioinformatics/btv184 |
malacology
|
2022-08-29 03:55 (UTC) |
examl-mpi
|
3.0.22-3 |
1 |
0.00
|
Exascale Maximum Likelihood https://doi.org/10.1093/bioinformatics/btv184 |
malacology
|
2022-08-29 03:55 (UTC) |
exonerate
|
2.4.0-2 |
3 |
0.00
|
A general purpose tool for biological sequence comparison |
malacology
|
2024-02-13 04:43 (UTC) |
fastdnaml
|
1.2.2-0 |
0 |
0.00
|
A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood https://doi.org/10.1093/bioinformatics/10.1.41 |
malacology
|
2024-02-05 02:14 (UTC) |
fastme
|
2.1.6.3-1 |
0 |
0.00
|
a comprehensive, accurate and fast distance-based phylogeny inference program https://doi.org/10.1093/molbev/msv150 |
malacology
|
2023-10-11 09:46 (UTC) |
fastp
|
0.23.4-3 |
0 |
0.00
|
a tool designed to provide fast all-in-one preprocessing for FastQ files, developed in C++ with multithreading supported to afford high performance |
malacology
|
2023-07-09 10:10 (UTC) |
fastqc
|
0.12.1-4 |
5 |
0.00
|
A quality control tool for high throughput sequence data. |
malacology
|
2023-06-23 18:01 (UTC) |
fastuniq
|
1.1-1 |
0 |
0.00
|
ultrafast de novo tool for removal of duplicates in paired short DNA sequence reads in FASTQ format https://doi.org/10.1371/journal.pone.0052249 |
malacology
|
2024-02-14 18:01 (UTC) |
fermi-lite
|
0.1.r13.g85f159e-2 |
1 |
0.00
|
Standalone C library for assembling Illumina short reads in small regions |
malacology
|
2023-03-22 05:31 (UTC) |
figtree
|
1.4.4-10 |
0 |
0.00
|
Graphical viewer of phylogenetic trees |
malacology
|
2023-04-04 19:02 (UTC) |
free-delta
|
3.3.0-1 |
0 |
0.00
|
An Open Source System for Processing Taxonomic Descriptions |
malacology
|
2023-12-30 16:16 (UTC) |
freec
|
11.6-2 |
0 |
0.00
|
Copy number and genotype annotation in whole genome and whole exome sequencing data |
malacology
|
2022-04-17 18:01 (UTC) |
garli
|
2.1-4 |
0 |
0.00
|
Phylogenetic analysis of molecular sequence data using the maximum-likelihood criterion |
malacology
|
2024-02-22 17:38 (UTC) |
garlic
|
1.6-13 |
3 |
0.00
|
Molecular visualization program |
malacology
|
2023-04-04 19:03 (UTC) |
garlic-doc
|
1.6-13 |
3 |
0.00
|
Documentation for garlic |
malacology
|
2023-04-04 19:03 (UTC) |
gatk
|
4.5.0.0-1 |
1 |
0.00
|
Genome Analysis Toolkit https://doi.org/10.1101/gr.107524.110 |
malacology
|
2023-12-14 00:08 (UTC) |
gblocks
|
0.91b-7 |
1 |
0.00
|
A program written in ANSI C language that eliminates poorly aligned positions and divergent regions of an alignment of DNA or protein sequences. https://doi.org/10.1093/oxfordjournals.molbev.a026334 |
malacology
|
2024-01-18 12:01 (UTC) |
genbankexplorer
|
1.9-6 |
1 |
0.00
|
Taxonomy-aware DNA sequence processing toolkit |
malacology
|
2022-12-04 01:53 (UTC) |
generax
|
2.1.3-1 |
0 |
0.00
|
A Tool for Species-Tree-Aware Maximum Likelihood-Based Gene Family Tree Inference under Gene Duplication, Transfer, and Loss https://doi.org/10.1093/molbev/msaa141 |
malacology
|
2024-01-16 20:30 (UTC) |
gffcompare
|
0.12.6-2 |
1 |
0.00
|
classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF |
malacology
|
2022-04-17 21:51 (UTC) |
gffread
|
0.12.7-2 |
1 |
0.00
|
GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more |
malacology
|
2022-04-17 21:51 (UTC) |
hybpiper
|
2.1.7-1 |
0 |
0.00
|
Recovering genes from targeted sequence capture data https://doi.org/10.3732/apps.1600016 |
malacology
|
2024-05-09 06:01 (UTC) |
iqtree
|
.2.3.4-1 |
3 |
0.37
|
Efficient phylogenomic software by maximum likelihood https://doi.org/10.1093/molbev/msaa015 |
malacology
|
2024-05-09 18:10 (UTC) |
iqtree-mpi
|
.2.3.4-1 |
0 |
0.00
|
Efficient phylogenomic software by maximum likelihood; multicore version (OMP). https://doi.org/10.1093/molbev/msaa015 |
malacology
|
2024-05-09 18:13 (UTC) |
jane
|
4.01-5 |
0 |
0.00
|
software tool for the cophylogeny reconstruction problem. https://doi.org/10.1186/1748-7188-5-16 |
malacology
|
2022-12-01 12:01 (UTC) |
jml
|
1.3.1-2 |
0 |
0.00
|
Testing hybridization using species trees https://doi.org/10.1111/j.1755-0998.2011.03065.x |
malacology
|
2022-08-28 10:37 (UTC) |
jmodeltest
|
2.1.10r20160303-7 |
1 |
0.00
|
Phylogenetic Model Averaging, more models, new heuristics and high-performance computing. https://doi.org/10.1093/molbev/msn083 |
malacology
|
2022-08-29 21:04 (UTC) |
last
|
1548-1 |
0 |
0.00
|
Genomic aligner for short reads https://doi.org/10.1093/nar/gkq010 |
malacology
|
2024-06-14 06:01 (UTC) |
legacybasic
|
1.0.2-1 |
0 |
0.00
|
BASIC interpreter for 1970s/80s BASIC games |
malacology
|
2023-10-20 10:26 (UTC) |
libmaus
|
2.0.812_release_20220919125234-3 |
1 |
0.00
|
Bioinformatics data structures and algorithms in C++ |
malacology
|
2022-10-19 16:35 (UTC) |
lilac-git
|
r1093.f627128-1 |
0 |
0.00
|
The build bot for archlinuxcn |
malacology
|
2023-06-05 04:54 (UTC) |
lvb
|
4.2-0 |
0 |
0.00
|
parsimony and simulated annealing in the search for phylogenetic trees https://doi.org/10.1093/bioinformatics/btg402 |
malacology
|
2023-07-29 12:26 (UTC) |
mafft-desktop
|
1.0-1 |
1 |
0.00
|
Desktop File For MAFFT |
malacology
|
2021-05-06 08:31 (UTC) |
mcscanx
|
2022.11.01-1 |
0 |
0.00
|
Multiple Collinearity Scan toolkit X version https://doi.org/10.1093/nar/gkr1293 |
malacology
|
2023-02-09 11:42 (UTC) |
mega
|
11.0.13-3 |
1 |
0.00
|
Molecular Evolutionary Genetics Analysis. https://doi.org/10.1093/molbev/msy096 |
malacology
|
2023-04-04 19:30 (UTC) |
megax-bin
|
10.2.6-1 |
2 |
0.12
|
Molecular Evolutionary Genetics Analysis |
malacology
|
2021-06-12 01:37 (UTC) |
mesquite
|
3.81_build955-1 |
0 |
0.00
|
A modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms |
malacology
|
2023-05-15 16:23 (UTC) |
mesquite-doc
|
3.81_build955-1 |
0 |
0.00
|
doc for mesquite |
malacology
|
2023-05-15 16:23 (UTC) |
mesquite-extra
|
3.81_build955-1 |
0 |
0.00
|
extra data for mesquite |
malacology
|
2023-05-15 16:23 (UTC) |
microtex-git
|
2022.12.23-1 |
2 |
0.00
|
A dynamic, cross-platform, and embeddable LaTeX rendering library |
malacology
|
2023-03-25 06:49 (UTC) |
modeltest-gui
|
0.1.7-8 |
0 |
0.00
|
A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models. https://doi.org/10.1093/molbev/msz189 |
malacology
|
2022-08-28 22:03 (UTC) |
modeltest-ng
|
0.1.7-6 |
0 |
0.00
|
A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models. https://doi.org/10.1093/molbev/msz189 |
malacology
|
2023-03-25 22:23 (UTC) |