1271 packages found. Page 3 of 26.

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Name Version Votes Popularity? Description Maintainer Last Updated
r-a4base 1.52.0-1 0 0.00 Automated Affymetrix Array Analysis Base Package BioArchLinuxBot 2024-05-03 13:02 (UTC)
r-sva 3.52.0-1 0 0.00 Surrogate Variable Analysis BioArchLinuxBot 2024-05-03 13:02 (UTC)
python-mdanalysis 2.7.0-1 1 0.00 An object-oriented python toolkit to analyze molecular dynamics trajectories generated by CHARMM, Gromacs, NAMD, LAMMPS, or Amber. hseara 2024-05-03 12:59 (UTC)
r-xcms 4.2.0-1 0 0.00 LC-MS and GC-MS Data Analysis BioArchLinuxBot 2024-05-03 12:55 (UTC)
r-sarc 1.2.0-1 0 0.00 Statistical Analysis of Regions with CNVs pekkarr 2024-05-03 12:50 (UTC)
r-mcsea 1.24.0-1 0 0.00 Methylated CpGs Set Enrichment Analysis BioArchLinuxBot 2024-05-03 12:48 (UTC)
r-vulcan 1.26.0-1 0 0.00 VirtUaL ChIP-Seq data Analysis using Networks BioArchLinuxBot 2024-05-03 12:35 (UTC)
r-guideseq 1.34.0-1 0 0.00 GUIDE-seq analysis pipeline BioArchLinuxBot 2024-05-03 12:32 (UTC)
r-redseq 1.50.0-1 0 0.00 Analysis of high-throughput sequencing data processed by restriction enzyme digestion BioArchLinuxBot 2024-05-03 12:31 (UTC)
r-splinetimer 1.32.0-1 0 0.00 Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction BioArchLinuxBot 2024-05-03 12:28 (UTC)
r-cpvsnp 1.36.0-1 0 0.00 Gene set analysis methods for SNP association p-values that lie in genes in given gene sets BioArchLinuxBot 2024-05-03 12:26 (UTC)
r-bicare 1.62.0-1 0 0.00 Biclustering Analysis and Results Exploration BioArchLinuxBot 2024-05-03 12:23 (UTC)
r-aucell 1.26.0-1 0 0.00 AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures) BioArchLinuxBot 2024-05-03 12:21 (UTC)
r-signaturesearch 1.18.0-1 0 0.00 Environment for Gene Expression Searching Combined with Functional Enrichment Analysis BioArchLinuxBot 2024-05-03 12:18 (UTC)
r-umi4cats 1.14.0-1 0 0.00 UMI4Cats: Processing, analysis and visualization of UMI-4C chromatin contact data BioArchLinuxBot 2024-05-03 12:15 (UTC)
r-drugvsdisease 2.46.0-1 0 0.00 Comparison of disease and drug profiles using Gene set Enrichment Analysis BioArchLinuxBot 2024-05-03 12:13 (UTC)
r-gnosis 1.2.0-1 0 0.00 Genomics explorer using statistical and survival analysis in R pekkarr 2024-05-03 09:37 (UTC)
r-imcrtools 1.10.0-1 0 0.00 Methods for imaging mass cytometry data analysis BioArchLinuxBot 2024-05-03 09:29 (UTC)
r-amaretto 1.20.0-1 0 0.00 Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression BioArchLinuxBot 2024-05-03 09:25 (UTC)
r-sesame 1.22.0-1 0 0.00 SEnsible Step-wise Analysis of DNA MEthylation BeadChips BioArchLinuxBot 2024-05-03 09:24 (UTC)
r-diffbind 3.14.0-1 0 0.00 Differential Binding Analysis of ChIP-Seq Peak Data BioArchLinuxBot 2024-05-03 09:19 (UTC)
r-spiat 1.6.0-1 0 0.00 Spatial Image Analysis of Tissues pekkarr 2024-05-03 09:12 (UTC)
r-omicspca 1.22.0-1 0 0.00 An R package for quantitative integration and analysis of multiple omics assays from heterogeneous samples BioArchLinuxBot 2024-05-03 08:51 (UTC)
r-structtoolbox 1.16.0-1 0 0.00 Data processing & analysis tools for Metabolomics and other omics BioArchLinuxBot 2024-05-03 08:49 (UTC)
r-spaniel 1.18.0-1 0 0.00 Spatial Transcriptomics Analysis BioArchLinuxBot 2024-05-03 08:41 (UTC)
r-methylpipe 1.38.0-1 0 0.00 Base resolution DNA methylation data analysis BioArchLinuxBot 2024-05-03 08:35 (UTC)
r-mitch 1.16.0-1 0 0.00 Multi-Contrast Gene Set Enrichment Analysis BioArchLinuxBot 2024-05-03 08:33 (UTC)
r-tradeseq 1.18.0-1 0 0.00 trajectory-based differential expression analysis for sequencing data BioArchLinuxBot 2024-05-03 08:30 (UTC)
r-circrnaprofiler 1.18.0-1 0 0.00 circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs BioArchLinuxBot 2024-05-03 08:29 (UTC)
r-derfinder 1.38.0-1 0 0.00 Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach BioArchLinuxBot 2024-05-03 08:18 (UTC)
r-spatialcpie 1.20.0-1 0 0.00 Cluster analysis of Spatial Transcriptomics data BioArchLinuxBot 2024-05-03 08:13 (UTC)
r-epigrahmm 1.12.0-1 0 0.00 Epigenomic R-based analysis with hidden Markov models BioArchLinuxBot 2024-05-03 08:11 (UTC)
python-librosa 0.10.2-1 10 1.01 Python library for music and audio analysis petronny 2024-05-03 07:59 (UTC)
r-tcgabiolinks 2.32.0-1 0 0.00 TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data BioArchLinuxBot 2024-05-03 07:50 (UTC)
r-tcseq 1.28.0-1 0 0.00 Time course sequencing data analysis BioArchLinuxBot 2024-05-03 07:46 (UTC)
r-tcc 1.44.0-1 0 0.00 TCC: Differential expression analysis for tag count data with robust normalization strategies BioArchLinuxBot 2024-05-03 07:44 (UTC)
r-ssviz 1.38.0-1 0 0.00 A small RNA-seq visualizer and analysis toolkit BioArchLinuxBot 2024-05-03 07:37 (UTC)
r-stager 1.26.0-1 0 0.00 stageR: stage-wise analysis of high throughput gene expression data in R BioArchLinuxBot 2024-05-03 07:36 (UTC)
r-splicingfactory 1.12.0-1 0 0.00 Splicing Diversity Analysis for Transcriptome Data BioArchLinuxBot 2024-05-03 07:35 (UTC)
r-spia 2.56.0-1 0 0.00 Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations BioArchLinuxBot 2024-05-03 07:02 (UTC)
r-cager 2.10.0-1 0 0.00 Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining BioArchLinuxBot 2024-05-03 06:36 (UTC)
r-cagefightr 1.24.0-1 0 0.00 Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor BioArchLinuxBot 2024-05-03 06:26 (UTC)
r-comapr 1.8.0-1 0 0.00 Crossover analysis and genetic map construction pekkarr 2024-05-03 06:21 (UTC)
r-genestructuretools 1.24.0-1 0 0.00 Tools for spliced gene structure manipulation and analysis BioArchLinuxBot 2024-05-03 06:14 (UTC)
r-cummerbund 2.46.0-1 0 0.00 Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data. BioArchLinuxBot 2024-05-03 06:07 (UTC)
r-tadar 1.2.0-1 0 0.00 Transcriptome Analysis of Differential Allelic Representation pekkarr 2024-05-03 06:01 (UTC)
r-musicatk 1.14.0-1 0 0.00 Mutational Signature Comprehensive Analysis Toolkit BioArchLinuxBot 2024-05-03 05:56 (UTC)
r-htseqgenie 4.34.0-1 0 0.00 A NGS analysis pipeline. BioArchLinuxBot 2024-05-03 05:54 (UTC)
r-resolve 1.6.0-1 0 0.00 An R package for the efficient analysis of mutational signatures from cancer genomes pekkarr 2024-05-03 05:50 (UTC)
r-cocoa 2.18.0-1 0 0.00 Coordinate Covariation Analysis BioArchLinuxBot 2024-05-03 05:38 (UTC)

1271 packages found. Page 3 of 26.

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