742 packages found. Page 3 of 15.

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Name Version Votes Popularity? Description Maintainer Last Updated
r-excluster 1.22.0-1 0 0.00 ExCluster robustly detects differentially expressed exons between two conditions of RNA-seq data, requiring at least two independent biological replicates per condition BioArchLinuxBot 2024-05-03 00:59 (UTC)
r-roar 1.40.0-1 0 0.00 Identify differential APA usage from RNA-seq alignments BioArchLinuxBot 2024-05-03 00:55 (UTC)
r-multihiccompare 1.22.0-1 0 0.00 Normalize and detect differences between Hi-C datasets when replicates of each experimental condition are available BioArchLinuxBot 2024-05-03 00:24 (UTC)
r-chromstar 1.30.0-1 0 0.00 Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data BioArchLinuxBot 2024-05-02 23:41 (UTC)
r-proteomm 1.22.0-1 0 0.00 Multi-Dataset Model-based Differential Expression Proteomics Analysis Platform BioArchLinuxBot 2024-05-02 23:10 (UTC)
r-seqgsea 1.44.0-1 0 0.00 Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing BioArchLinuxBot 2024-05-02 23:07 (UTC)
r-censcyt 1.12.0-1 0 0.00 Differential abundance analysis with a right censored covariate in high-dimensional cytometry BioArchLinuxBot 2024-05-02 23:00 (UTC)
r-gg4way 1.2.0-1 0 0.00 4way Plots of Differential Expression pekkarr 2024-05-02 22:20 (UTC)
r-delocal 1.4.0-1 0 0.00 Identifies differentially expressed genes with respect to other local genes pekkarr 2024-05-02 22:19 (UTC)
r-genetonic 2.8.0-1 0 0.00 Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis BioArchLinuxBot 2024-05-02 22:16 (UTC)
r-desubs 1.30.0-1 0 0.00 DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments BioArchLinuxBot 2024-05-02 22:13 (UTC)
r-dewseq 1.18.0-1 0 0.00 Differential Expressed Windows Based on Negative Binomial Distribution BioArchLinuxBot 2024-05-02 22:08 (UTC)
r-deformats 1.32.0-1 0 0.00 Differential gene expression data formats converter BioArchLinuxBot 2024-05-02 22:05 (UTC)
r-waddr 1.18.0-1 0 0.00 Statistical tests for detecting differential distributions based on the 2-Wasserstein distance BioArchLinuxBot 2024-05-02 21:51 (UTC)
r-differentialregulation 2.2.0-1 0 0.00 Differentially regulated genes from scRNA-seq data pekkarr 2024-05-02 21:45 (UTC)
r-fishpond 2.10.0-1 0 0.00 Fishpond: differential transcript and gene expression with inferential replicates BioArchLinuxBot 2024-05-02 21:41 (UTC)
r-cydar 1.28.0-1 0 0.00 Using Mass Cytometry for Differential Abundance Analyses BioArchLinuxBot 2024-05-02 21:37 (UTC)
r-destiny 3.18.0-1 0 0.00 Creates diffusion maps BioArchLinuxBot 2024-05-02 21:33 (UTC)
r-aggregatebiovar 1.14.0-1 0 0.00 Differential Gene Expression Analysis for Multi-subject scRNA-seq BioArchLinuxBot 2024-05-02 21:29 (UTC)
r-dce 1.12.0-1 0 0.00 Pathway Enrichment Based on Differential Causal Effects BioArchLinuxBot 2024-05-02 21:03 (UTC)
r-cocitestats 1.76.0-1 0 0.00 Different test statistics based on co-citation. BioArchLinuxBot 2024-05-02 20:59 (UTC)
r-diffcoexp 1.24.0-1 0 0.00 Differential Co-expression Analysis BioArchLinuxBot 2024-05-02 20:55 (UTC)
r-csdr 1.10.0-1 0 0.00 Differential gene co-expression BioArchLinuxBot 2024-05-02 20:54 (UTC)
r-moda 1.30.0-1 0 0.00 MODA: MOdule Differential Analysis for weighted gene co-expression network BioArchLinuxBot 2024-05-02 20:53 (UTC)
r-diffcyt 1.24.0-1 0 0.00 Differential discovery in high-dimensional cytometry via high-resolution clustering BioArchLinuxBot 2024-05-02 20:28 (UTC)
r-cytokernel 1.10.0-1 0 0.00 Differential expression using kernel-based score test BioArchLinuxBot 2024-05-02 20:27 (UTC)
r-rolde 1.8.0-1 0 0.00 Robust longitudinal Differential Expression pekkarr 2024-05-02 20:23 (UTC)
r-normalyzerde 1.22.0-1 0 0.00 Evaluation of normalization methods and calculation of differential expression analysis statistics BioArchLinuxBot 2024-05-02 19:54 (UTC)
r-proda 1.18.0-1 0 0.00 Differential Abundance Analysis of Label-Free Mass Spectrometry Data BioArchLinuxBot 2024-05-02 19:43 (UTC)
r-saturn 1.12.0-1 0 0.00 Scalable Analysis of Differential Transcript Usage for Bulk and Single-Cell RNA-sequencing Applications BioArchLinuxBot 2024-05-02 19:39 (UTC)
r-pairadise 1.20.0-1 0 0.00 PAIRADISE: Paired analysis of differential isoform expression BioArchLinuxBot 2024-05-02 19:28 (UTC)
r-hummingbird 1.14.0-1 0 0.00 Bayesian Hidden Markov Model for the detection of differentially methylated regions BioArchLinuxBot 2024-05-02 19:22 (UTC)
r-regsplice 1.30.0-1 0 0.00 L1-regularization based methods for detection of differential splicing BioArchLinuxBot 2024-05-02 19:19 (UTC)
r-aldex2 1.36.0-1 0 0.00 Analysis Of Differential Abundance Taking Sample Variation Into Account BioArchLinuxBot 2024-05-02 19:17 (UTC)
r-sdams 1.24.0-1 0 0.00 Differential Abundant/Expression Analysis for Metabolomics, Proteomics and single-cell RNA sequencing Data BioArchLinuxBot 2024-05-02 19:09 (UTC)
r-seqarchr 1.8.0-1 0 0.00 Identify Different Architectures of Sequence Elements pekkarr 2024-05-02 18:36 (UTC)
python-libnmap 0.7.3-1 2 0.00 Python NMAP library enabling you to start async nmap tasks, parse and compare/diff scan results. Python 3 version from PyPi kiwi42 2024-05-02 18:24 (UTC)
r-monocle 2.32.0-1 0 0.00 Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq BioArchLinuxBot 2024-05-02 12:52 (UTC)
r-plpe 1.64.0-1 0 0.00 Local Pooled Error Test for Differential Expression with Paired High-throughput Data BioArchLinuxBot 2024-05-02 12:34 (UTC)
r-noiseq 2.48.0-1 0 0.00 Exploratory analysis and differential expression for RNA-seq data BioArchLinuxBot 2024-05-02 12:31 (UTC)
r-hem 1.76.0-1 0 0.00 Heterogeneous error model for identification of differentially expressed genes under multiple conditions BioArchLinuxBot 2024-05-02 12:30 (UTC)
r-plgem 1.76.0-1 0 0.00 Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM) BioArchLinuxBot 2024-05-02 12:24 (UTC)
r-biodist 1.76.0-1 0 0.00 Different distance measures BioArchLinuxBot 2024-05-02 12:22 (UTC)
r-ebarrays 2.68.0-1 0 0.00 Unified Approach for Simultaneous Gene Clustering and Differential Expression Identification BioArchLinuxBot 2024-05-02 12:17 (UTC)
python-dhash 1.4-3 0 0.00 Calculate the difference hash (perceptual hash) for an image peippo 2024-05-02 09:02 (UTC)
r-compcoder 1.40.0-1 0 0.00 RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods BioArchLinuxBot 2024-05-02 05:50 (UTC)
r-rvisdiff 1.2.0-1 0 0.00 Interactive Graphs for Differential Expression pekkarr 2024-05-02 05:46 (UTC)
r-diffustats 1.24.0-1 0 0.00 Diffusion scores on biological networks BioArchLinuxBot 2024-05-02 05:36 (UTC)
r-dcats 1.2.0-1 0 0.00 Differential Composition Analysis Transformed by a Similarity matrix pekkarr 2024-05-02 04:49 (UTC)
r-ebseq 2.2.0-1 0 0.00 An R package for gene and isoform differential expression analysis of RNA-seq data BioArchLinuxBot 2024-05-02 04:46 (UTC)

742 packages found. Page 3 of 15.

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