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r-curatedtcgadata
|
1.26.0-1 |
0 |
0.00
|
Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects |
BioArchLinuxBot
|
2024-05-03 08:27 (UTC) |
|
r-crlmm
|
1.62.0-1 |
0 |
0.00
|
Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays |
BioArchLinuxBot
|
2024-05-02 22:43 (UTC) |
|
r-crisprseek
|
1.44.0-1 |
0 |
0.00
|
Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems |
BioArchLinuxBot
|
2024-05-03 03:01 (UTC) |
|
r-cpgassoc
|
2.60-9 |
0 |
0.00
|
Association Between Methylation and a Phenotype of Interest |
BioArchLinuxBot
|
2024-03-14 18:12 (UTC) |
|
r-contibait
|
1.30.0-2 |
0 |
0.00
|
Improves Early Build Genome Assemblies using Strand-Seq Data |
BioArchLinuxBot
|
2024-04-28 15:53 (UTC) |
|
r-consensusseeker
|
1.32.0-1 |
0 |
0.00
|
Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges |
BioArchLinuxBot
|
2024-05-03 01:02 (UTC) |
|
r-consensus
|
1.22.0-1 |
0 |
0.00
|
Cross-platform consensus analysis of genomic measurements via interlaboratory testing method |
BioArchLinuxBot
|
2024-05-01 18:49 (UTC) |
|
r-compspot
|
1.2.0-1 |
0 |
0.00
|
Tool for identifying and comparing significantly mutated genomic hotspots |
pekkarr
|
2024-05-02 05:00 (UTC) |
|
r-compepitools
|
1.38.0-1 |
0 |
0.00
|
Tools for computational epigenomics |
BioArchLinuxBot
|
2024-05-03 09:28 (UTC) |
|
r-comethdmr
|
1.8.0-1 |
0 |
0.00
|
Accurate identification of co-methylated and differentially methylated regions in epigenome-wide association studies |
pekkarr
|
2024-05-03 14:25 (UTC) |
|
r-comet
|
1.34.0-1 |
0 |
0.00
|
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns |
BioArchLinuxBot
|
2023-10-27 14:53 (UTC) |
|
r-cogito
|
1.10.0-1 |
0 |
0.00
|
Compare genomic intervals tool - Automated, complete, reproducible and clear report about genomic and epigenomic data sets |
BioArchLinuxBot
|
2024-05-03 02:44 (UTC) |
|
r-cnvrd2
|
1.42.0-1 |
0 |
0.00
|
CNVrd2: a read depth-based method to detect and genotype complex common copy number variants from next generation sequencing data. |
BioArchLinuxBot
|
2024-05-03 04:38 (UTC) |
|
r-cnvranger
|
1.20.0-1 |
0 |
0.00
|
Summarization and expression/phenotype association of CNV ranges |
BioArchLinuxBot
|
2024-05-03 07:47 (UTC) |
|
r-chromswitch
|
1.22.0-3 |
0 |
0.00
|
An R package to detect chromatin state switches from epigenomic data |
BioArchLinuxBot
|
2024-04-27 22:16 (UTC) |
|
r-chromscape
|
1.14.0-1 |
0 |
0.00
|
Analysis of single-cell epigenomics datasets with a Shiny App |
BioArchLinuxBot
|
2024-05-03 02:00 (UTC) |
|
r-chromplot
|
1.32.0-1 |
0 |
0.00
|
Global visualization tool of genomic data |
BioArchLinuxBot
|
2024-05-02 23:12 (UTC) |
|
r-chromheatmap
|
1.58.0-1 |
0 |
0.00
|
Heat map plotting by genome coordinate |
BioArchLinuxBot
|
2024-05-03 12:10 (UTC) |
|
r-chippeakanno
|
3.38.0-1 |
0 |
0.00
|
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments, or any experiments that result in large number of genomic interval data |
BioArchLinuxBot
|
2024-05-03 12:06 (UTC) |
|
r-chicago
|
1.32.0-1 |
0 |
0.00
|
CHiCAGO: Capture Hi-C Analysis of Genomic Organization |
BioArchLinuxBot
|
2024-05-01 21:39 (UTC) |
|
r-cgdsr
|
1.3.0-4 |
0 |
0.00
|
R-Based API for Accessing the MSKCC Cancer Genomics Data Server (CGDS) |
BioArchLinuxBot
|
2022-06-07 13:12 (UTC) |
|
r-cfdnapro
|
1.10.0-1 |
0 |
0.00
|
cfDNAPro Helps Characterise and Visualise Whole Genome Sequencing Data from Liquid Biopsy |
BioArchLinuxBot
|
2024-05-03 03:33 (UTC) |
|
r-cbpmanager
|
1.12.0-1 |
0 |
0.00
|
Generate, manage, and edit data and metadata files suitable for the import in cBioPortal for Cancer Genomics |
BioArchLinuxBot
|
2024-05-02 00:55 (UTC) |
|
r-caomicsv
|
1.25.0-4 |
0 |
0.00
|
Visualization of multi-dimentional cancer genomics data |
BioArchLinuxBot
|
2022-11-04 06:04 (UTC) |
|
r-cancersubtypes
|
1.26.0-2 |
0 |
0.00
|
Cancer subtypes identification, validation and visualization based on multiple genomic data sets |
BioArchLinuxBot
|
2024-02-15 18:08 (UTC) |
|
r-cancer
|
1.38.0-1 |
0 |
0.00
|
A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC |
BioArchLinuxBot
|
2024-05-03 14:39 (UTC) |
|
r-bsgenomeforge
|
1.4.0-1 |
0 |
0.00
|
Forge BSgenome data packages |
pekkarr
|
2024-05-08 12:05 (UTC) |
|
r-bsgenome.scerevisiae.ucsc.saccer3
|
1.4.0-3 |
0 |
0.00
|
Saccharomyces cerevisiae (Yeast) full genome (UCSC version sacCer3) |
pekkarr
|
2024-04-27 20:06 (UTC) |
|
r-bsgenome.scerevisiae.ucsc.saccer2
|
1.4.0-3 |
0 |
0.00
|
Saccharomyces cerevisiae (Yeast) full genome (UCSC version sacCer2) |
peippo
|
2023-07-03 12:10 (UTC) |
|
r-bsgenome.mmusculus.ucsc.mm9
|
1.4.0-4 |
0 |
0.00
|
Full genome sequences for Mus musculus (UCSC version mm9) |
BioArchLinuxBot
|
2022-06-05 21:29 (UTC) |
|
r-bsgenome.mmusculus.ucsc.mm10
|
1.4.3-4 |
0 |
0.00
|
Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6) |
BioArchLinuxBot
|
2022-06-05 21:29 (UTC) |
|
r-bsgenome.hsapiens.ucsc.hg38
|
1.4.5-3 |
0 |
0.00
|
Full genome sequences for Homo sapiens (UCSC version hg38, based on GRCh38.p13) |
BioArchLinuxBot
|
2023-02-09 18:25 (UTC) |
|
r-bsgenome.hsapiens.ucsc.hg19
|
1.4.3-4 |
0 |
0.00
|
Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13) |
BioArchLinuxBot
|
2022-06-05 21:28 (UTC) |
|
r-bsgenome.hsapiens.ucsc.hg18
|
1.3.1000-4 |
0 |
0.00
|
Full genome sequences for Homo sapiens (UCSC version hg18) |
BioArchLinuxBot
|
2022-06-05 21:28 (UTC) |
|
r-bsgenome.hsapiens.ncbi.grch38
|
1.3.1000-3 |
0 |
0.00
|
Full genome sequences for Homo sapiens (GRCh38) |
peippo
|
2023-07-03 12:12 (UTC) |
|
r-bsgenome.hsapiens.1000genomes.hs37d5
|
0.99.1-3 |
0 |
0.00
|
1000genomes Reference Genome Sequence (hs37d5) |
pekkarr
|
2024-04-27 20:08 (UTC) |
|
r-bsgenome.ecoli.ncbi.20080805
|
1.3.1000-4 |
0 |
0.00
|
Escherichia coli full genomes |
BioArchLinuxBot
|
2022-06-05 21:27 (UTC) |
|
r-bsgenome.drerio.ucsc.danrer7
|
1.4.0-4 |
0 |
0.00
|
Full genome sequences for Danio rerio (UCSC version danRer7) |
BioArchLinuxBot
|
2022-06-05 21:27 (UTC) |
|
r-bsgenome.celegans.ucsc.ce2
|
1.4.0-4 |
0 |
0.00
|
Full genome sequences for Caenorhabditis elegans (UCSC version ce2) |
BioArchLinuxBot
|
2022-06-05 21:27 (UTC) |
|
r-bsgenome
|
1.72.0-1 |
0 |
0.00
|
Software infrastructure for efficient representation of full genomes and their SNPs |
BioArchLinuxBot
|
2024-05-03 00:50 (UTC) |
|
r-brgenomics
|
1.14.1-1 |
0 |
0.00
|
Tools for the Efficient Analysis of High-Resolution Genomics Data |
BioArchLinuxBot
|
2024-03-03 00:04 (UTC) |
|
r-biovizbase
|
1.52.0-1 |
0 |
0.00
|
Basic graphic utilities for visualization of genomic data. |
BioArchLinuxBot
|
2024-05-03 04:35 (UTC) |
|
r-biomm
|
1.15.0-2 |
0 |
0.00
|
Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data |
BioArchLinuxBot
|
2024-02-11 18:11 (UTC) |
|
r-biomartr
|
1.0.7-1 |
0 |
0.00
|
Genomic Data Retrieval |
BioArchLinuxBot
|
2023-12-03 00:12 (UTC) |
|
r-bioconcotk
|
1.24.0-1 |
0 |
0.00
|
Bioconductor components for general cancer genomics |
BioArchLinuxBot
|
2024-05-03 09:26 (UTC) |
|
r-bdmmacorrect
|
1.18.1-2 |
0 |
0.00
|
Meta-analysis for the metagenomic read counts data from different cohorts |
BioArchLinuxBot
|
2024-02-11 12:04 (UTC) |
|
r-baalchip
|
1.30.0-1 |
0 |
0.00
|
BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes |
BioArchLinuxBot
|
2024-05-02 23:46 (UTC) |
|
r-annotatr
|
1.30.0-1 |
0 |
0.00
|
Annotation of Genomic Regions to Genomic Annotations |
BioArchLinuxBot
|
2024-05-03 04:26 (UTC) |
|
r-annmap
|
1.46.0-1 |
0 |
0.00
|
Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis. |
BioArchLinuxBot
|
2024-05-02 02:12 (UTC) |
|
r-alps
|
1.8.0-6 |
0 |
0.00
|
AnaLysis routines for ePigenomicS data |
BioArchLinuxBot
|
2022-11-26 17:36 (UTC) |