|
seqtk
|
1.3-1 |
2 |
0.00
|
Toolkit for processing sequences in FASTA/Q formats |
alienzj
|
2019-10-30 02:02 (UTC) |
|
alignace
|
1.0-6 |
0 |
0.00
|
Program that finds sequence elements conserved in a set of DNA sequences |
allencch
|
2017-06-22 17:25 (UTC) |
|
bioprospector
|
2004-3 |
0 |
0.00
|
A DNA seqence motif finding programs |
allencch
|
2017-03-17 14:28 (UTC) |
|
inclusive
|
3.2-4 |
0 |
0.00
|
Integrated clustering, upstream sequence retrieval and motif sampling |
allencch
|
2020-01-24 16:21 (UTC) |
|
mdscan
|
2004-3 |
0 |
0.00
|
A DNA seqence motif finding programs |
allencch
|
2017-03-17 14:52 (UTC) |
|
rmotifgen
|
3.0-4 |
0 |
0.00
|
Random motif sequence generator for genomic sequences |
allencch
|
2018-12-30 04:33 (UTC) |
|
weeder
|
1.4.2-4 |
0 |
0.00
|
Motif (transcription factor binding sites) discovery in sequences from coregulated genes of a single species |
allencch
|
2017-03-17 15:38 (UTC) |
|
python-pyfamsa
|
0.4.0-1 |
0 |
0.00
|
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments |
althonos
|
2024-05-06 14:44 (UTC) |
|
python-pytantan
|
0.1.1-1 |
0 |
0.00
|
Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences. |
althonos
|
2024-05-15 09:54 (UTC) |
|
python-scoring-matrices
|
0.2.1-1 |
0 |
0.00
|
Dependency free, Cython-compatible scoring matrices to use with biological sequences. |
althonos
|
2024-06-06 10:03 (UTC) |
|
gnome-shell-extension-fixed-ime-list
|
11-1 |
0 |
0.00
|
Make the IME list in fixed sequence instead of MRU. |
AlynxZhou
|
2024-03-26 07:17 (UTC) |
|
libhdate-glib
|
0.5.0-5 |
1 |
0.00
|
Gobject bindings for LibHdate. LibHdate is a small C,C++ library for Hebrew calendar, dates, holidays, and reading sequence (parasha). |
amiad
|
2018-02-10 20:41 (UTC) |
|
cdd
|
2018.april.2-1 |
0 |
0.00
|
The Conserved Domain Database is a resource for the annotation of functional units in proteins. Its collection of domain models includes a set curated by NCBI, which utilizes 3D structure to provide insights into sequence/structure/function relationships. |
anadon
|
2018-04-04 20:26 (UTC) |
|
fingerprintscan
|
3.5.96-2 |
1 |
0.00
|
Search against FingerPRINTScan with a protein query sequence to identify the closest matching PRINTS sequence motif fingerprints in a protein sequence. |
anadon
|
2018-04-09 18:32 (UTC) |
|
hmmer3-2
|
3-1 |
0 |
0.00
|
Profile hidden Markov models (HMMs) for database searching using consensus sequences containing the version 2 and 3 implementations. |
anadon
|
2018-03-01 21:22 (UTC) |
|
pfam
|
31.0-1 |
0 |
0.00
|
The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs). |
anadon
|
2018-04-02 16:31 (UTC) |
|
pftools
|
2.3-3 |
0 |
0.00
|
Contains all the software necessary to build protein and DNA generalized profiles and use them to scan and align sequences, and search databases. |
anadon
|
2018-04-09 19:44 (UTC) |
|
tigrfam
|
15.0-1 |
0 |
0.00
|
TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins. |
anadon
|
2018-04-02 17:56 (UTC) |
|
astromatic-scamp
|
2.10.0-1 |
6 |
0.00
|
computes astrometric and photometric solutions for any arbitrary sequence of FITS images in a completely automatic way. |
andalenavals
|
2023-07-17 20:08 (UTC) |
|
libdiff
|
0.1.0-4 |
0 |
0.00
|
C library to generate arbitrary sequence diffs |
aperez
|
2018-12-28 01:54 (UTC) |
|
naconnect
|
85-3 |
0 |
0.00
|
ncurses-based ALSA MIDI sequencer connection manager |
aperez
|
2024-06-11 09:19 (UTC) |
|
pmidi
|
1.7.1-1 |
2 |
0.00
|
Command line MIDI player using the ALSA sequencer |
aperez
|
2018-02-12 13:29 (UTC) |
|
b-step-git
|
r80.3e7d24f-2 |
0 |
0.00
|
The MonoPlugs b-step sequencer |
apoorv569
|
2024-02-26 05:20 (UTC) |
|
muse-git
|
latest.r0.8b83cb3e-1 |
3 |
0.00
|
A MIDI/Audio sequencer with recording and editing capabilities |
aquilarubra
|
2021-03-28 15:34 (UTC) |
|
seqdiag
|
3.0.0-2 |
1 |
0.43
|
Sequence-diagram images from .diag files |
arenevier
|
2024-03-20 14:11 (UTC) |
|
bamrescue
|
0.3.0-1 |
0 |
0.00
|
Utility to check Binary Sequence Alignment / Map (BAM) files for corruption and repair them |
Arkanosis
|
2023-02-23 03:07 (UTC) |
|
sequoia-octopus-librnp
|
1.8.0-1 |
1 |
0.00
|
A Sequoia-based OpenPGP Backend for Thunderbird |
AsamK
|
2024-02-25 19:54 (UTC) |
|
sequoia-octopus-librnp-git
|
1.5.0.r9.gfb59485-1 |
0 |
0.00
|
A Sequoia-based OpenPGP Backend for Thunderbird |
AsamK
|
2023-07-15 08:54 (UTC) |
|
fqgrep
|
0.4.4-1 |
0 |
0.00
|
An approximate sequence pattern matcher for FASTQ/FASTA files |
atb
|
2016-11-24 05:57 (UTC) |
|
stickwar2
|
1.0-1 |
0 |
0.00
|
The Epic Sequel to the Strategy Game Stick War |
ayatale
|
2024-04-25 14:00 (UTC) |
|
shcopy-bin
|
0.1.3-1 |
1 |
0.00
|
Copy text to clipboard from anywhere using ANSI OSC 52 sequence |
aymanbagabas
|
2023-03-07 00:24 (UTC) |
|
logseq-desktop-git
|
0.9.9.r1.9a8d5ea6a-1 |
4 |
0.06
|
A privacy-first, open-source platform for knowledge sharing and management. |
bader
|
2023-10-05 02:52 (UTC) |
|
bcl2fastq-bin
|
2.20.0.422-2 |
0 |
0.00
|
Demultiplexes data and converts BCL files generated by Illumina sequencers to FASTQ for downstream analysis |
balwierz
|
2018-03-16 00:51 (UTC) |
|
ossia-score-bin
|
3.1.12-1 |
0 |
0.00
|
An interactive sequencer for the intermedia arts (binary release) |
begin-theadventu
|
2023-10-31 09:23 (UTC) |
|
ent
|
1.2-1 |
19 |
0.00
|
Pseudorandom number sequence test |
Bevan
|
2021-05-14 18:16 (UTC) |
|
diamond
|
2.1.9-1 |
3 |
0.00
|
High performance sequence aligner for protein and translated DNA searches with big sequence data. https://doi.org/10.1038/s41592-021-01101-x |
BioArchLinuxBot
|
2024-01-31 18:09 (UTC) |
|
mafft
|
7.526-1 |
14 |
0.00
|
Multiple alignment program for amino acid or nucleotide sequences. https://doi.org/10.1093/molbev/mst010 |
BioArchLinuxBot
|
2024-04-26 13:05 (UTC) |
|
r-abseqr
|
1.22.0-1 |
0 |
0.00
|
Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries |
BioArchLinuxBot
|
2024-05-01 23:27 (UTC) |
|
r-absseq
|
1.58.0-1 |
0 |
0.00
|
ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences |
BioArchLinuxBot
|
2024-05-01 18:32 (UTC) |
|
r-ace
|
1.22.0-1 |
0 |
0.00
|
Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing |
BioArchLinuxBot
|
2024-05-02 02:30 (UTC) |
|
r-aggregatebiovar
|
1.14.0-1 |
0 |
0.00
|
Differential Gene Expression Analysis for Multi-subject scRNA-seq |
BioArchLinuxBot
|
2024-05-02 21:29 (UTC) |
|
r-airway
|
1.24.0-1 |
0 |
0.00
|
RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells, by Himes et al PLoS One 2014 |
BioArchLinuxBot
|
2024-05-03 07:33 (UTC) |
|
r-anaquin
|
2.28.0-1 |
0 |
0.00
|
Statistical analysis of sequins |
BioArchLinuxBot
|
2024-05-02 22:11 (UTC) |
|
r-aneufinder
|
1.32.0-1 |
0 |
0.00
|
Analysis of Copy Number Variation in Single-Cell-Sequencing Data |
BioArchLinuxBot
|
2024-05-02 23:40 (UTC) |
|
r-anota2seq
|
1.26.0-1 |
0 |
0.00
|
Generally applicable transcriptome-wide analysis of translational efficiency using anota2seq |
BioArchLinuxBot
|
2024-05-02 22:07 (UTC) |
|
r-apalyzer
|
1.18.0-1 |
0 |
0.00
|
A toolkit for APA analysis using RNA-seq data |
BioArchLinuxBot
|
2024-05-03 04:48 (UTC) |
|
r-aspli
|
2.14.0-1 |
0 |
0.00
|
Analysis of Alternative Splicing Using RNA-Seq |
BioArchLinuxBot
|
2024-05-07 12:16 (UTC) |
|
r-atacseqqc
|
1.28.0-1 |
0 |
0.00
|
ATAC-seq Quality Control |
BioArchLinuxBot
|
2024-05-03 19:09 (UTC) |
|
r-aucell
|
1.26.0-1 |
0 |
0.00
|
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures) |
BioArchLinuxBot
|
2024-05-03 12:21 (UTC) |
|
r-bader
|
1.42.0-1 |
0 |
0.00
|
Bayesian Analysis of Differential Expression in RNA Sequencing Data |
BioArchLinuxBot
|
2024-05-02 03:52 (UTC) |