summarylogtreecommitdiffstats
diff options
context:
space:
mode:
authorBioArchLinuxBot2024-05-08 12:05:22 +0000
committerBioArchLinuxBot2024-05-08 12:05:22 +0000
commitf234091a77befeeaa90697cf4fc1ace23c1f3f3c (patch)
treefc916dc62fe0eec31a18826cd27f34150b95e1c3
parent47e3d239ba1b870c6dfd2f5a1b9731b0617eb799 (diff)
downloadaur-r-bsgenomeforge.tar.gz
[lilac] updated to 1.4.0-1
-rw-r--r--.SRCINFO13
-rw-r--r--PKGBUILD11
2 files changed, 15 insertions, 9 deletions
diff --git a/.SRCINFO b/.SRCINFO
index 5207b6d6904b..b24d05e5a4ce 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,6 +1,6 @@
pkgbase = r-bsgenomeforge
pkgdesc = Forge BSgenome data packages
- pkgver = 1.2.3
+ pkgver = 1.4.0
pkgrel = 1
url = https://bioconductor.org/packages/BSgenomeForge
arch = any
@@ -8,21 +8,24 @@ pkgbase = r-bsgenomeforge
checkdepends = r-testthat
depends = r-biobase
depends = r-biocgenerics
+ depends = r-biocio
depends = r-biostrings
depends = r-bsgenome
depends = r-genomeinfodb
+ depends = r-genomicranges
depends = r-iranges
depends = r-rtracklayer
depends = r-s4vectors
optdepends = r-biocstyle
+ optdepends = r-bsgenome.celegans.ucsc.ce2
optdepends = r-devtools
optdepends = r-genomicfeatures
- optdepends = r-genomicranges
optdepends = r-knitr
optdepends = r-rmarkdown
+ optdepends = r-rsamtools
optdepends = r-testthat
- source = https://bioconductor.org/packages/release/bioc/src/contrib/BSgenomeForge_1.2.3.tar.gz
- md5sums = f6b0c95390692557860c977b1eba0f0c
- b2sums = 4b0ba548243f7afb2a5bcb019032b13de5c12ae6d7306686ff2cdc760b61224e71fc8be88680218890078f50e9d911fc3502fa50b4ce074c6c76871d9e211d81
+ source = https://bioconductor.org/packages/release/bioc/src/contrib/BSgenomeForge_1.4.0.tar.gz
+ md5sums = 22dca3b3a7c2277c174c20cd5df0b698
+ b2sums = a9e8236b6588462966ac068d57aadab8a5856208ccd2faa714298f622ac3c456bd972d85f9a37370dc051623866fb1a6a87747d7e6ecace2d768cf5c933e81a5
pkgname = r-bsgenomeforge
diff --git a/PKGBUILD b/PKGBUILD
index e5692d5400c9..0f3da2a6c132 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,7 +1,7 @@
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=BSgenomeForge
-_pkgver=1.2.3
+_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
@@ -12,9 +12,11 @@ license=('Artistic-2.0')
depends=(
r-biobase
r-biocgenerics
+ r-biocio
r-biostrings
r-bsgenome
r-genomeinfodb
+ r-genomicranges
r-iranges
r-rtracklayer
r-s4vectors
@@ -24,16 +26,17 @@ checkdepends=(
)
optdepends=(
r-biocstyle
+ r-bsgenome.celegans.ucsc.ce2
r-devtools
r-genomicfeatures
- r-genomicranges
r-knitr
r-rmarkdown
+ r-rsamtools
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-md5sums=('f6b0c95390692557860c977b1eba0f0c')
-b2sums=('4b0ba548243f7afb2a5bcb019032b13de5c12ae6d7306686ff2cdc760b61224e71fc8be88680218890078f50e9d911fc3502fa50b4ce074c6c76871d9e211d81')
+md5sums=('22dca3b3a7c2277c174c20cd5df0b698')
+b2sums=('a9e8236b6588462966ac068d57aadab8a5856208ccd2faa714298f622ac3c456bd972d85f9a37370dc051623866fb1a6a87747d7e6ecace2d768cf5c933e81a5')
build() {
mkdir build