[lilac] updated to 1.44.0-1

2 files changed, 31 insertions, 20 deletions

diff --git a/.SRCINFO b/.SRCINFO
index a0e272e10623..c6babb5d5a7d 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,11 +1,13 @@
 pkgbase = r-quasr
 	pkgdesc = Quantify and Annotate Short Reads in R
-	pkgver = 1.42.1
+	pkgver = 1.44.0
 	pkgrel = 1
 	url = https://bioconductor.org/packages/QuasR
 	arch = x86_64
-	license = GPL
-	depends = r
+	license = GPL-2.0-only
+	makedepends = r-rhtslib
+	depends = bzip2
+	depends = curl
 	depends = r-annotationdbi
 	depends = r-biobase
 	depends = r-biocgenerics
@@ -18,11 +20,13 @@ pkgbase = r-quasr
 	depends = r-genomicranges
 	depends = r-iranges
 	depends = r-rbowtie
-	depends = r-rhtslib
 	depends = r-rsamtools
 	depends = r-rtracklayer
 	depends = r-s4vectors
 	depends = r-shortread
+	depends = r-txdbmaker
+	depends = xz
+	depends = zlib
 	optdepends = r-biocstyle
 	optdepends = r-covr
 	optdepends = r-genomicalignments
@@ -31,7 +35,8 @@ pkgbase = r-quasr
 	optdepends = r-rhisat2
 	optdepends = r-rmarkdown
 	optdepends = r-testthat
-	source = https://bioconductor.org/packages/release/bioc/src/contrib/QuasR_1.42.1.tar.gz
-	sha256sums = d66ef1bbf95ae60bb5b7cf87dea6dae6adcc92229ef69984b1589073b7bc2519
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/QuasR_1.44.0.tar.gz
+	md5sums = 9a98ddfa2e479bfe68cc9c8ec38fedd7
+	b2sums = c3c01e1b4dd242c737d5c1b8d9da74547d1ced56a82b1d7741848caee395a56897b8903955ff508787b5b2155161867026f9518c10d514051476adc00f0325c4
 
 pkgname = r-quasr
diff --git a/PKGBUILD b/PKGBUILD
index c0d07fa3894e..1696e6675c5a 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,17 +1,17 @@
-# system requirements: GNU make
 # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
 
 _pkgname=QuasR
-_pkgver=1.42.1
+_pkgver=1.44.0
 pkgname=r-${_pkgname,,}
-pkgver=1.42.1
+pkgver=${_pkgver//-/.}
 pkgrel=1
-pkgdesc='Quantify and Annotate Short Reads in R'
-arch=('x86_64')
-url="https://bioconductor.org/packages/${_pkgname}"
-license=('GPL')
+pkgdesc="Quantify and Annotate Short Reads in R"
+arch=(x86_64)
+url="https://bioconductor.org/packages/$_pkgname"
+license=('GPL-2.0-only')
 depends=(
-  r
+  bzip2
+  curl
   r-annotationdbi
   r-biobase
   r-biocgenerics
@@ -24,11 +24,16 @@ depends=(
   r-genomicranges
   r-iranges
   r-rbowtie
-  r-rhtslib
   r-rsamtools
   r-rtracklayer
   r-s4vectors
   r-shortread
+  r-txdbmaker
+  xz
+  zlib
+)
+makedepends=(
+  r-rhtslib
 )
 optdepends=(
   r-biocstyle
@@ -41,14 +46,15 @@ optdepends=(
   r-testthat
 )
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('d66ef1bbf95ae60bb5b7cf87dea6dae6adcc92229ef69984b1589073b7bc2519')
+md5sums=('9a98ddfa2e479bfe68cc9c8ec38fedd7')
+b2sums=('c3c01e1b4dd242c737d5c1b8d9da74547d1ced56a82b1d7741848caee395a56897b8903955ff508787b5b2155161867026f9518c10d514051476adc00f0325c4')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et: