diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 34 |
1 files changed, 20 insertions, 14 deletions
@@ -1,17 +1,17 @@ -# system requirements: GNU make # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=QuasR -_pkgver=1.42.1 +_pkgver=1.44.0 pkgname=r-${_pkgname,,} -pkgver=1.42.1 +pkgver=${_pkgver//-/.} pkgrel=1 -pkgdesc='Quantify and Annotate Short Reads in R' -arch=('x86_64') -url="https://bioconductor.org/packages/${_pkgname}" -license=('GPL') +pkgdesc="Quantify and Annotate Short Reads in R" +arch=(x86_64) +url="https://bioconductor.org/packages/$_pkgname" +license=('GPL-2.0-only') depends=( - r + bzip2 + curl r-annotationdbi r-biobase r-biocgenerics @@ -24,11 +24,16 @@ depends=( r-genomicranges r-iranges r-rbowtie - r-rhtslib r-rsamtools r-rtracklayer r-s4vectors r-shortread + r-txdbmaker + xz + zlib +) +makedepends=( + r-rhtslib ) optdepends=( r-biocstyle @@ -41,14 +46,15 @@ optdepends=( r-testthat ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") -sha256sums=('d66ef1bbf95ae60bb5b7cf87dea6dae6adcc92229ef69984b1589073b7bc2519') +md5sums=('9a98ddfa2e479bfe68cc9c8ec38fedd7') +b2sums=('c3c01e1b4dd242c737d5c1b8d9da74547d1ced56a82b1d7741848caee395a56897b8903955ff508787b5b2155161867026f9518c10d514051476adc00f0325c4') build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + mkdir build + R CMD INSTALL -l build "$_pkgname" } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" } -# vim:set ts=2 sw=2 et: |