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| author | BioArchLinuxBot | 2024-05-02 23:36:45 +0000 |
|---|---|---|
| committer | BioArchLinuxBot | 2024-05-02 23:36:45 +0000 |
| commit | 1e1d0fcab11d45103ba982b6a61e1ca57c5bc557 (patch) | |
| tree | 8b4aabaac9a13b5c6ca7322af9f9fe2ea4c7bcc2 | |
| parent | ebbb9b6eb71aa186ba9b6c8a3a99498be91aa765 (diff) | |
| download | aur-r-rtracklayer.tar.gz | |
[lilac] updated to 1.64.0-1
| -rw-r--r-- | .SRCINFO | 17 | ||||
| -rw-r--r-- | PKGBUILD | 22 |
2 files changed, 16 insertions, 23 deletions
@@ -1,19 +1,21 @@ pkgbase = r-rtracklayer pkgdesc = R interface to genome annotation files and the UCSC genome browser - pkgver = 1.62.0 - pkgrel = 2 + pkgver = 1.64.0 + pkgrel = 1 url = https://bioconductor.org/packages/rtracklayer arch = x86_64 license = Artistic-2.0 AND LicenseRef-rtracklayer + depends = curl depends = openssl depends = r-biocgenerics depends = r-biocio depends = r-biostrings + depends = r-curl depends = r-genomeinfodb depends = r-genomicalignments depends = r-genomicranges + depends = r-httr depends = r-iranges - depends = r-rcurl depends = r-restfulr depends = r-rsamtools depends = r-s4vectors @@ -32,11 +34,8 @@ pkgbase = r-rtracklayer optdepends = r-org.hs.eg.db optdepends = r-runit optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene - source = https://bioconductor.org/packages/release/bioc/src/contrib/rtracklayer_1.62.0.tar.gz - source = rtracklayer-fix-format.patch::https://github.com/lawremi/rtracklayer/commit/86407bbef2d02455053b7b7c96afe9c5ce6949e7.patch - md5sums = a16a9ca02e49808b38823899860abdb6 - md5sums = 21d1f10d3fc8764eda00651f1318e119 - b2sums = 720a430ebeefa578905ab1e2ab20f6e17c7d58c2e4cff98313ba78dbbb81132c7f05632894ca57e8f65f553bedd8253d45f7a571a8cf2d6c8f96da7cba6ba917 - b2sums = 93a6ea0626d428a2ef43ec110c526057b1fcc80925e150f4d0d10846c534eb508c11b265e5fa6cd60a16a91665a58ac204cceefb8ae9c41bf2f03f6b02b2544b + source = https://bioconductor.org/packages/release/bioc/src/contrib/rtracklayer_1.64.0.tar.gz + md5sums = 244c1ee304157345abf9c0fd4dbb826f + b2sums = 25d59d580d0f110997623189349b02e843500161dccdf0fff8af65b68f0b7578e5611fc407829e7bc3adc6395974d3c7a02f09edffcc73cdf2a3050fb5f80c23 pkgname = r-rtracklayer @@ -1,24 +1,26 @@ # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=rtracklayer -_pkgver=1.62.0 +_pkgver=1.64.0 pkgname=r-${_pkgname,,} pkgver=${_pkgver//-/.} -pkgrel=2 +pkgrel=1 pkgdesc="R interface to genome annotation files and the UCSC genome browser" arch=(x86_64) url="https://bioconductor.org/packages/$_pkgname" license=('Artistic-2.0 AND LicenseRef-rtracklayer') depends=( + curl openssl r-biocgenerics r-biocio r-biostrings + r-curl r-genomeinfodb r-genomicalignments r-genomicranges + r-httr r-iranges - r-rcurl r-restfulr r-rsamtools r-s4vectors @@ -40,17 +42,9 @@ optdepends=( r-runit r-txdb.hsapiens.ucsc.hg19.knowngene ) -source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz" - "$_pkgname-fix-format.patch::https://github.com/lawremi/rtracklayer/commit/86407bbef2d02455053b7b7c96afe9c5ce6949e7.patch") -md5sums=('a16a9ca02e49808b38823899860abdb6' - '21d1f10d3fc8764eda00651f1318e119') -b2sums=('720a430ebeefa578905ab1e2ab20f6e17c7d58c2e4cff98313ba78dbbb81132c7f05632894ca57e8f65f553bedd8253d45f7a571a8cf2d6c8f96da7cba6ba917' - '93a6ea0626d428a2ef43ec110c526057b1fcc80925e150f4d0d10846c534eb508c11b265e5fa6cd60a16a91665a58ac204cceefb8ae9c41bf2f03f6b02b2544b') - -prepare() { - # fix format string errors - patch -Np1 -d "$_pkgname" < "$_pkgname-fix-format.patch" -} +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('244c1ee304157345abf9c0fd4dbb826f') +b2sums=('25d59d580d0f110997623189349b02e843500161dccdf0fff8af65b68f0b7578e5611fc407829e7bc3adc6395974d3c7a02f09edffcc73cdf2a3050fb5f80c23') build() { mkdir build |