diff options
| author | BioArchLinuxBot | 2023-05-14 12:14:12 +0000 |
|---|---|---|
| committer | BioArchLinuxBot | 2023-05-14 12:14:12 +0000 |
| commit | eefbbd9325ff56bac4a7b698b3895cc9fb7cebf8 (patch) | |
| tree | 6ff8634142662ecf9c8d35c329eafdcfb2c6bd7d /PKGBUILD | |
| parent | db7e98f9a66f7861411c7167b2b0b5320e55ecfc (diff) | |
| download | aur-artemis.tar.gz | |
[lilac] updated to 18.2.0-6
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 82 |
1 files changed, 63 insertions, 19 deletions
@@ -1,31 +1,75 @@ -# Maintainer: Clint Valentine <valentine.clint@gmail.com> +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> +# Contributor: Clint Valentine <valentine.clint@gmail.com> -pkgname='artemis' +pkgname=artemis +_pkgname=Artemis pkgver=18.2.0 -pkgrel=5 +pkgrel=6 pkgdesc='A genome viewer and annotation tool that visualizes biological sequence features' arch=('x86_64') url=https://www.sanger.ac.uk/science/tools/"${pkgname}" license=('GPL2') -depends=('java-runtime>=1.6') -source=("${pkgname}"-"${pkgver}".tar.gz::https://github.com/sanger-pathogens/Artemis/releases/download/v${pkgver}/artemis-unix-release-${pkgver}.tar.gz) -sha256sums=('06441e1abab139cb0a09d5844cb1b84ae727ace53a6c0efdd1eea8d8cfab8382') - +depends=('java-runtime') +makedepends=('java-environment' 'maven') +source=($pkgname-$pkgver.tar.gz::https://github.com/sanger-pathogens/Artemis/archive/refs/tags/v${pkgver}.tar.gz + act.desktop + artemis.desktop + bamview.desktop + dnaplotter.desktop) +sha256sums=('842c055f5cce021adbaea4f076b2ea80335ab1e44fbaa34b2ab608df6314a18e' + 'a7dda77f6518c98af6df88ba5d725f1b89d86aca125240f63a9c6e08afeb2a24' + 'dea9a1cc47b110c4f6ebe17c1b698866082997ffd9e6008d89847ddf745a0789' + '3ca519b00ffac02d635a62884996ad5b8c4580d8ffe8fcd427ee4edee1562f00' + 'ef584b45f9c92da15511779f20a1a1449915315066662e4c142ea4cd92dd717c') +#prepare() { +#scripts=('act' 'art' 'bamview' 'dnaplotter') +# cd $srcdir/$_pkgname-$pkgver +# patch -N -i $srcdir/fix_bin.patch +#} +build() { + cd $srcdir/$_pkgname-$pkgver + mvn validate + mvn package +} package() { - cd "${srcdir}"/"${pkgname}" +bina=('act' 'art' 'bamview' 'dnaplotter') +scripts=('act' 'artemis' 'bamview' 'dnaplotter') + + # desktop + cd $srcdir/ + for des in ${scripts[@]} +do + install -Dm 755 $des.desktop $pkgdir/usr/share/applications/$des.desktop +done + + # bin + cd $srcdir/$_pkgname-$pkgver + for bin in ${bina[@]} +do + install -Dm 775 $bin $pkgdir/usr/share/$pkgname/$bin +done - sed -i 's#ARTEMIS_HOME=`dirname "$PRG"`/.#ARTEMIS_HOME=/opt/artemis/#' art - sed -i 's#ACT_HOME=`dirname "$PRG"`/.#ACT_HOME=/opt/artemis/#' act - sed -i 's#ARTEMIS_HOME=`dirname "$PRG"`/.#ARTEMIS_HOME=/opt/artemis/#' dnaplotter + # jar + cd $srcdir/$_pkgname-$pkgver/target/jars + for jar in $(ls *.jar) +do + install -Dm 755 $jar $pkgdir/usr/share/$pkgname/target/jars/$jar +done - mkdir -p "${pkgdir}"/opt/"${pkgname}"/ - cp -a * "${pkgdir}"/opt/"${pkgname}"/ + # icons + cd $srcdir/$_pkgname-$pkgver/target/classes/images + for icn in ${scripts[@]} +do + mv ${icn}_icon.png ${icn}.png + install -Dm 644 ${icn}.png $pkgdir/usr/share/pixmaps/${icn}.png +done - scripts=('act' 'art' 'dnaplotter') - for script in "${scripts[@]}"; do - install -Dm775 "${script}" "${pkgdir}"/usr/bin/"${script}" - rm "${pkgdir}"/opt/"${pkgname}"/"${script}" - done + # link bin + cd $srcdir/$_pkgname-$pkgver + mkdir -p $pkgdir/usr/bin + for bin in ${bina[@]} +do + ln -s /usr/share/$pkgname/$bin $pkgdir/usr/bin/$bin +done - install -Dm644 README.md "${pkgdir}"/usr/share/doc/"${pkgname}"/README.md } |