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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=QuasR
_pkgver=1.44.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Quantify and Annotate Short Reads in R"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only')
depends=(
bzip2
curl
r-annotationdbi
r-biobase
r-biocgenerics
r-biocparallel
r-biostrings
r-bsgenome
r-genomeinfodb
r-genomicfeatures
r-genomicfiles
r-genomicranges
r-iranges
r-rbowtie
r-rsamtools
r-rtracklayer
r-s4vectors
r-shortread
r-txdbmaker
xz
zlib
)
makedepends=(
r-rhtslib
)
optdepends=(
r-biocstyle
r-covr
r-genomicalignments
r-gviz
r-knitr
r-rhisat2
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('9a98ddfa2e479bfe68cc9c8ec38fedd7')
b2sums=('c3c01e1b4dd242c737d5c1b8d9da74547d1ced56a82b1d7741848caee395a56897b8903955ff508787b5b2155161867026f9518c10d514051476adc00f0325c4')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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