diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 30 |
1 files changed, 18 insertions, 12 deletions
@@ -1,16 +1,15 @@ # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=ribosomeProfilingQC -_pkgver=1.14.1 +_pkgver=1.16.0 pkgname=r-${_pkgname,,} -pkgver=1.14.1 +pkgver=${_pkgver//-/.} pkgrel=1 -pkgdesc='Ribosome Profiling Quality Control' -arch=('any') -url="https://bioconductor.org/packages/${_pkgname}" -license=('GPL') +pkgdesc="Ribosome Profiling Quality Control" +arch=(any) +url="https://bioconductor.org/packages/$_pkgname" +license=('GPL-3.0-or-later') depends=( - r r-annotationdbi r-biocgenerics r-biostrings @@ -20,6 +19,7 @@ depends=( r-genomicalignments r-genomicfeatures r-genomicranges + r-ggextra r-ggfittext r-ggplot2 r-ggrepel @@ -31,27 +31,33 @@ depends=( r-ruvseq r-s4vectors r-scales + r-txdbmaker r-xvector ) optdepends=( + r-ashr + r-biobase r-biocstyle r-bsgenome.drerio.ucsc.danrer10 + r-deseq2 r-edger r-knitr r-limma r-rmarkdown r-runit r-testthat + r-vsn ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") -sha256sums=('c7460cca1cc4a2a730670ba59f6a05659deef401075e0bc74aed98f3cf03214d') +md5sums=('d633d56b98baef25b32f80e354eb9e8f') +b2sums=('e2e0d0c504111989bb2805be01036f84f7e83c7bb8648d8b611822a4de69313d5c3cb6a0a9d8c794877c5bb2ad80589d32834fb3b9f6d3f777d1c8fbfb5d6b9b') build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + mkdir build + R CMD INSTALL -l build "$_pkgname" } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" } -# vim:set ts=2 sw=2 et: |