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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=ribosomeProfilingQC
_pkgver=1.18.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Ribosome Profiling Quality Control"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-or-later')
depends=(
r-annotationdbi
r-biocgenerics
r-biostrings
r-bsgenome
r-edaseq
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-ggextra
r-ggfittext
r-ggplot2
r-ggrepel
r-iranges
r-motifstack
r-rsamtools
r-rsubread
r-rtracklayer
r-ruvseq
r-s4vectors
r-scales
r-txdbmaker
r-xvector
)
optdepends=(
r-ashr
r-biobase
r-biocstyle
r-bsgenome.drerio.ucsc.danrer10
r-deseq2
r-edger
r-knitr
r-limma
r-rmarkdown
r-runit
r-testthat
r-vsn
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('a3c34fd8292aea1d9c4e2c2e02a04cb1')
b2sums=('90208bed1cc7cffba571dab8b614ebc54dc97be91d1dcd7516c41b45d9d65ced8ca52a080d86f4897f9382dca0e7065b3df17b1306a555fd593a817db7321ee3')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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