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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=ribosomeProfilingQC
_pkgver=1.14.1
pkgname=r-${_pkgname,,}
pkgver=1.14.1
pkgrel=1
pkgdesc='Ribosome Profiling Quality Control'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-annotationdbi
r-biocgenerics
r-biostrings
r-bsgenome
r-edaseq
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-ggfittext
r-ggplot2
r-ggrepel
r-iranges
r-motifstack
r-rsamtools
r-rsubread
r-rtracklayer
r-ruvseq
r-s4vectors
r-scales
r-xvector
)
optdepends=(
r-biocstyle
r-bsgenome.drerio.ucsc.danrer10
r-edger
r-knitr
r-limma
r-rmarkdown
r-runit
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('c7460cca1cc4a2a730670ba59f6a05659deef401075e0bc74aed98f3cf03214d')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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