blob: 8d84aa570696c522438f14fd5d3b0b0863ba682e (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
|
# Maintainer: Michael Schubert <mschu.dev at gmail> github.com/mschubert/PKGBUILDs
# Contributor: Mick Elliot <micke at sfu dot ca>
pkgname=ncbi-toolkit
pkgver=29.2.0
pkgrel=1
pkgdesc="Applications, scripts and C++ libraries for the analysis of biological data"
arch=('x86_64')
url="https://github.com/ncbi/ncbi-cxx-toolkit-public"
license=('custom')
depends=('python' 'pcre' 'sqlite' 'lzo' 'libtiff' 'giflib' 'libxpm'
'mariadb-libs' 'libpng' 'gnutls' 'libxml2' 'libxslt')
optdepends=('fltk' 'wxgtk' 'fcgi')
makedepends=('autoconf' 'cpio')
provides=('blast+-bin')
conflicts=('blast+-bin')
source=($pkgname-$pkgver.tar.gz::$url/archive/refs/tags/release/$pkgver.tar.gz
LICENSE)
sha256sums=('4bb2701b2cc8b4b29b5cde10088142d3c71c0ffd59e5f3402a1a6eec3d07db7e'
'78bbf3f310ff43f1b5f711e7221d51da1e6f055831bd6c6941e0650bf1261df2')
build() {
# https://ncbi.github.io/cxx-toolkit/pages/ch_config#ch_config.UNIX
FLAGS="\
--without-debug \
--with-bin-release \
--with-dll \
--without-static \
--with-optimization \
--with-autodep \
--with-64 \
--with-mt \
--prefix=/usr \
--with-build-root=$srcdir/build \
--without-bdb \
--without-internal \
--without-boost" # current version in repo not compatible
cd ncbi-cxx-toolkit-public-release-$pkgver
# rm -f "$srcdir"/build/inc/ncbiconf_unix.h # in case of previous build
./configure $FLAGS
make
}
package() {
cd ncbi-cxx-toolkit-public-release-$pkgver
make prefix="$pkgdir"/usr libdir="$pkgdir"/usr/lib install
find "$pkgdir"/usr/bin -name "*test*" -delete
}
|