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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=Cepo
_pkgver=1.12.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Cepo for the identification of differentially stable genes"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-biocparallel
r-delayedarray
r-delayedmatrixstats
r-dplyr
r-ggplot2
r-gseabase
r-hdf5array
r-patchwork
r-purrr
r-reshape2
r-rlang
r-s4vectors
r-singlecellexperiment
r-summarizedexperiment
)
optdepends=(
r-biocstyle
r-covr
r-escape
r-fgsea
r-knitr
r-pheatmap
r-rmarkdown
r-scater
r-scmerge
r-testthat
r-upsetr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('3af4bf60206bb2421a63d68009a361e0')
b2sums=('7be12bcfb38ffa8d820a046d0b94830dbc2c8efc1d2dc9e735fc321a4a361ed3a78e682e49f90229b0ce235639cd45a3b4221346abc432c48f049e28ed6e4f50')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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