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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=clustifyr
_pkgver=1.18.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Classifier for Single-cell RNA-seq Using Cell Clusters"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-cowplot
r-dplyr
r-entropy
r-fgsea
r-ggplot2
r-httr
r-matrixstats
r-proxy
r-rlang
r-s4vectors
r-scales
r-seuratobject
r-singlecellexperiment
r-stringr
r-summarizedexperiment
r-tibble
r-tidyr
)
optdepends=(
r-biocmanager
r-biocstyle
r-complexheatmap
r-covr
r-data.table
r-ggrepel
r-gprofiler2
r-knitr
r-purrr
r-r.utils
r-remotes
r-rmarkdown
r-shiny
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('d77ecc21f83dc756601f836e80765342')
b2sums=('ba47c45ac9095d4b2c7080dd1e0cd6024c2aa8db4895cd04deeef080e5a4f16538d690843d658b55be5ba1d1e9ad607b784cf3d2b1760ecf8e57699ea79c973d')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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