blob: d0e10d4d875005110d55ef7ebb76f716b28bd042 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=clustifyr
_pkgver=1.16.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Classifier for Single-cell RNA-seq Using Cell Clusters"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-cowplot
r-dplyr
r-entropy
r-fgsea
r-ggplot2
r-httr
r-matrixstats
r-proxy
r-rlang
r-s4vectors
r-scales
r-seuratobject
r-singlecellexperiment
r-stringr
r-summarizedexperiment
r-tibble
r-tidyr
)
optdepends=(
r-biocmanager
r-biocstyle
r-complexheatmap
r-covr
r-data.table
r-ggrepel
r-gprofiler2
r-knitr
r-purrr
r-r.utils
r-remotes
r-rmarkdown
r-shiny
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('e636ea159b4fe186b37a723f523395d0')
b2sums=('f8d280fb46591d82825ad306c3aee5c54d33af416c0c842f44d13cb10b34de69b9acaf441a8662ec7964a2fb6433672fc21e89c2afcd315ddf5b76b81b05076a')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
|