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# system requirements: GNU make
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=epigraHMM
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=1.10.0
pkgrel=1
pkgdesc='Epigenomic R-based analysis with hidden Markov models'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-bamsignals
r-csaw
r-data.table
r-genomeinfodb
r-genomicranges
r-ggplot2
r-ggpubr
r-greylistchip
r-iranges
r-limma
r-magrittr
r-pheatmap
r-rcpp
r-rcpparmadillo
r-rhdf5
r-rhdf5lib
r-rsamtools
r-rtracklayer
r-s4vectors
r-scales
r-summarizedexperiment
make
)
optdepends=(
r-biocstyle
r-bsgenome.rnorvegicus.ucsc.rn4
r-chromstardata
r-gcapc
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('36f7bdc1714747c0e94910417250cc1e68851b0a7336ae2fdd354c058f83f774')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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