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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=logicFS
_pkgver=2.30.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Identification of SNP Interactions"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('LGPL-2.0-or-later')
depends=(
  r-logicreg
  r-mcbiopi
)
optdepends=(
  r-genefilter
  r-siggenes
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('19c936e15bf37930722b0b570f63b0ee')
b2sums=('14ecbf9bfae4c3f08d811660011fca7d2d56de4c46e506780163f72c5da2ba102f8d14fe55ecee3cd172a83e87ac3ec7e49f2e1fa5230345e6d42527cc289302')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}