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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=MethTargetedNGS
_pkgver=1.38.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Perform Methylation Analysis on Next Generation Sequencing Data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
hmmer
r-biostrings
r-gplots
r-pwalign
r-seqinr
r-stringr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('a8d565caedbbee4c1e3028b13b58f6c6')
b2sums=('2aa8f2f733ab65821aa731f91845fc3be4d5e1eef01908bcae2af6cfa4be1e2ffb138f21c7af5212fb5e011964c581646345749f75899c6cf4f4ed32cd0c5b8f')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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