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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=RcisTarget
_pkgver=1.26.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic regions"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-arrow
r-aucell
r-biocgenerics
r-data.table
r-dplyr
r-genomeinfodb
r-genomicranges
r-gseabase
r-r.utils
r-s4vectors
r-summarizedexperiment
r-tibble
r-zoo
)
optdepends=(
r-biobase
r-biocparallel
r-biocstyle
r-doparallel
r-dt
r-foreach
r-gplots
r-igraph
r-knitr
r-rcistarget.hg19.motifdbs.cisbponly.500bp
r-rmarkdown
r-rtracklayer
r-testthat
r-visnetwork
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('10124dd3e66007aa4e69635ff4a2055a')
b2sums=('4f9e58a4a6e0b512d387988c5928efef7cf1cfd233064cc383ab3e6ab42c7e3cc8be62fb6421bba04b37a9e3c506738233cc7151dcfada30a57b8d0ec380a701')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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