blob: f4ca8b1f4698386c4fbff8ba9c8e0dc3fd903bff (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=RcisTarget
_pkgver=1.20.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=2
pkgdesc="RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic regions"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-arrow
r-aucell
r-biocgenerics
r-data.table
r-dplyr
r-genomeinfodb
r-genomicranges
r-gseabase
r-r.utils
r-s4vectors
r-summarizedexperiment
r-tibble
)
optdepends=(
r-biobase
r-biocparallel
r-biocstyle
r-doparallel
r-dt
r-foreach
r-gplots
r-igraph
r-knitr
r-rcistarget.hg19.motifdbs.cisbponly.500bp
r-rmarkdown
r-rtracklayer
r-testthat
r-visnetwork
)
source=("https://bioconductor.org/packages/3.17/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('0f7605c0a9396d116b777b4954011027')
b2sums=('c566bd26dd1a7fbec7628d048d4d5d533c34a893c08eddfdd441ff9cfd57af727d99f31e7993e0e6f6a7cb59bc779e22a7da84cdb7a73cbfe4bc7a00c9b5ba90')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|