blob: b15cf99e9888a89da2b8274a0558a34f5d1a5d2f (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
|
# Maintainer: Ronny Lorenz <ronny at tbi dot univie dot ac dot at>
pkgname=rnamicro
pkgver=1.1.4
pkgrel=1
pkgdesc="Distinguish miRNA precursor sequences from other (putative) non-coding RNAs"
arch=('x86_64' 'i686')
license=('Custom')
url="http://www.tbi.univie.ac.at/~jana/software/RNAmicro.html"
depends=('pcre')
optdepends=()
makedepends=()
provides=()
source=(http://www.bioinf.uni-leipzig.de/~jana/downloads/RNAmicro${pkgver}.tar
buildfix.patch)
md5sums=( '85890a3731b39fd4f66a8368f2288491'
'e68fd817f27938c4e11a1565d0c2ad59')
prepare() {
cd "${srcdir}/RNAmicro${pkgver}"
# remove shipped binaries
rm -f RNAmicro svm.o
# patch sources to build correctly and include newer version of libsvm
patch -p1 < ../buildfix.patch
}
build() {
cd "${srcdir}/RNAmicro${pkgver}"
make || return 1
}
package() {
cd "${srcdir}/RNAmicro${pkgver}"
install -Dm755 RNAmicro "${pkgdir}/usr/bin/RNAmicro"
# install example files
for aln in examples/*.aln
do
install -Dm644 ${aln} "${pkgdir}/usr/share/${pkgname}/${aln}"
done
# install models
for aln in models/*.model
do
install -Dm644 ${aln} "${pkgdir}/usr/share/${pkgname}/${aln}"
done
# install documentation
install -Dm644 doku/shortDocu.pdf "${pkgdir}/usr/share/doc/${pkgname}/shortDocu.pdf"
}
|