Package Details: blast+ 2.16.0-1

Git Clone URL: https://aur.archlinux.org/blast+.git (read-only, click to copy)
Package Base: blast+
Description: BLAST tool suite from NCBI (blastn, blastp, blastx, psiblast, etc)
Upstream URL: http://blast.ncbi.nlm.nih.gov/
Licenses: custom
Conflicts: blast, blast+-bin, ncbi-blast, proj
Provides: blast
Replaces: ncbi-blast
Submitter: wookietreiber
Maintainer: mys_721tx
Last Packager: mys_721tx
Votes: 7
Popularity: 0.000000
First Submitted: 2015-07-07 11:11 (UTC)
Last Updated: 2024-07-19 06:07 (UTC)

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kbipinkumar commented on 2025-06-26 07:22 (UTC)

the package fails to build with following errors. Complete log can be found here

/usr/bin/g++  -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -fPIC    -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/blast+/src/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/build/blast+/src/ncbi-blast-2.16.0+-src/c++/include  -DNCBI_BUILD_SESSION_ID=17397ac3-ea12-44b4-ae06-1e4454429d5d /build/blast+/src/ncbi-blast-2.16.0+-src/c++/src/serial/hookdata.cpp -o hookdata.o 
/usr/bin/g++  -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -fPIC    -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/blast+/src/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/build/blast+/src/ncbi-blast-2.16.0+-src/c++/include  -DNCBI_BUILD_SESSION_ID=17397ac3-ea12-44b4-ae06-1e4454429d5d /build/blast+/src/ncbi-blast-2.16.0+-src/c++/src/serial/hookdatakey.cpp -o hookdatakey.o 
/usr/bin/g++  -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k  -pthread -fopenmp -O2 -fPIC    -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/blast+/src/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/build/blast+/src/ncbi-blast-2.16.0+-src/c++/include  -DNCBI_BUILD_SESSION_ID=17397ac3-ea12-44b4-ae06-1e4454429d5d /build/blast+/src/ncbi-blast-2.16.0+-src/c++/src/serial/typeinfo.cpp -o typeinfo.o 
make[4]: Leaving directory '/build/blast+/src/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial'
FAILED: src/serial/Makefile.serial.lib
make[4]: Entering directory '/build/blast+/src/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial'
/bin/rm -f libxser.so libxser.so .xser.dep .libxser.so.stamp
/bin/rm -f /build/blast+/src/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxser.so /build/blast+/src/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xser.dep
make[4]: Leaving directory '/build/blast+/src/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial'
make[3]: *** [/build/blast+/src/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.meta_l:336: all.nonusr] Error 2
make[3]: Leaving directory '/build/blast+/src/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial'
make[2]: *** [/build/blast+/src/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.meta_l:288: all_l.real] Error 2
make[2]: Leaving directory '/build/blast+/src/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial'
make[1]: *** [/build/blast+/src/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
make[1]: Leaving directory '/build/blast+/src/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build'
make: *** [Makefile:24: all] Error 2
?[1m?[31m==> ERROR:?(B?[m?[1m A failure occurred in build().?(B?[m
?[1m    Aborting...?(B?[m

mys_721tx commented on 2023-06-19 06:27 (UTC) (edited on 2023-08-24 07:11 (UTC) by mys_721tx)

blast+ 2.14.0 cannot be compiled under GCC 13 due to breaking changes. Upstream is notified. Upstream fixed the problem in 2.14.1.

mys_721tx commented on 2022-11-25 18:46 (UTC)

@buggs Sorry for the late reply. -j should be handled by MAKEFLAGS, which is in /etc/makepkg.conf.

buggs commented on 2022-10-28 16:48 (UTC)

Could you add -j to make so it uses all cores to build? make -j

stick commented on 2022-02-03 22:06 (UTC)

Welcome to the new maintainer @mys_721tx!

mys_721tx commented on 2022-02-03 22:04 (UTC)

I am happy to take over the maintenance if you wish.

stick commented on 2022-02-03 21:56 (UTC) (edited on 2022-02-03 21:56 (UTC) by stick)

@mys_721tx bumped (and conflicts updated), thanks!

mys_721tx commented on 2022-02-02 09:44 (UTC)

Bump for 2.12.0. The sha256sum is fda3c9c9d488cad6c1880a98a236d842bcf3610e3e702af61f7a48cf0a714b88.

Also blast+ is in conflict with proj due to libproj.so

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