Package Details: ugene-bin 42.0-1

Git Clone URL: (read-only, click to copy)
Package Base: ugene-bin
Description: A free cross-platform genome analysis suite (binary release)
Upstream URL:
Licenses: GPL
Conflicts: ugene-git
Provides: ugene
Submitter: WFCody
Maintainer: None
Last Packager: malacology
Votes: 3
Popularity: 0.002446
First Submitted: 2018-01-11 09:45 (UTC)
Last Updated: 2022-03-16 18:45 (UTC)

Dependencies (32)

Required by (0)

Sources (3)

Latest Comments

malacology commented on 2021-07-20 09:09 (UTC) (edited on 2021-07-20 09:10 (UTC) by malacology)

I contain more things already containing in ugene packages. Maybe it's shame to me.

Rhinoceros commented on 2021-07-20 00:22 (UTC)

It's actually ugene -ui, but that doesn't work either. You definitely shouldn't need sudo to run the program, nor need to chown. Otherwise other users wouldn't be able to use it! I think the problem is that /usr/share/ugene/ugenecl and other files in /usr/share/ugene are missing the o+x permission. I've tested ugene-git, and this works perfectly. Also, the dependency list for ugene-git looks much more comprehensive!

malacology commented on 2021-07-19 14:25 (UTC) (edited on 2021-07-19 14:26 (UTC) by malacology)

I think you need try to ugene -gui or try to use sudo to run or use chown to change the owner. Finally, you can try sudo ugene -gui

Rhinoceros commented on 2021-07-19 13:46 (UTC)

Still fails. Are you testing it yourself?

$ ugene
/usr/bin/ugene: line 61: /usr/share/ugene/ugenecl: Permission denied

malacology commented on 2021-07-19 12:46 (UTC)

Try it now.

Rhinoceros commented on 2021-07-19 12:32 (UTC) (edited on 2021-07-19 12:32 (UTC) by Rhinoceros)

Ah okay. I didn't really understand what you meant by Sorry, what's wrong with you?

malacology commented on 2021-07-19 12:20 (UTC)

I know, the dir structure has been changed

Rhinoceros commented on 2021-07-19 09:52 (UTC)

Thanks. It looks like you aren't building in a clean directory. You are missing the ==> Extracting sources... stage (should be before Entering fakeroot environment). You are also missing ==> Starting package().... Presumably your directory already had icons.tar.gz for some reason.

malacology commented on 2021-07-19 09:24 (UTC)

Sorry, what's wrong with you?

==> Validating source files with sha256sums...
    ugene-39.0-linux-x86-64.tar.gz ... Passed
    ugene.desktop ... Passed
==> Entering fakeroot environment...
==> Creating source package...
  -> Adding PKGBUILD...
  -> Generating .SRCINFO file...
  -> Adding ugene.desktop...
  -> Compressing source package...
==> Leaving fakeroot environment.
==> Signing package...
  -> Created signature file ugene-bin-39.0-1.src.tar.gz.sig.
==> Source package created: ugene-bin (Mon 19 Jul 2021 17:20:19 CST)

malacology commented on 2021-07-19 08:27 (UTC)

I found a error yesterday, I will fix it, also invite you as co-maintainer

Rhinoceros commented on 2021-07-19 08:16 (UTC)

Also the permissions are a bit wrong. Normal users can't run it because only root has executable permissions for /usr/share/ugene/ugene (symlinked from /usr/bin/ugene). I changed that, then got permission denied for /usr/share/ugene/ugene. There are probably more permissions that need to be fixed.

Rhinoceros commented on 2021-07-19 08:08 (UTC)

I can't make this package. Looks like there is a missing file.

==> Starting package()...
tar: icons.tar.gz: Cannot open: No such file or directory
tar: Error is not recoverable: exiting now
==> ERROR: A failure occurred in package().
error making: ugene-bin

malacology commented on 2021-05-14 03:35 (UTC)

Now the version of the package is 38.1.

WFCody commented on 2018-11-09 08:35 (UTC)

Dear all, ugene finally can build with current (5.12) Qt! I am disowning the binary package since I am migrating to ugene-git.