Search Criteria
Package Details: ugene-bin 42.0-1
Package Actions
Git Clone URL: | https://aur.archlinux.org/ugene-bin.git (read-only, click to copy) |
---|---|
Package Base: | ugene-bin |
Description: | A free cross-platform genome analysis suite (binary release) |
Upstream URL: | http://ugene.net |
Licenses: | GPL |
Conflicts: | ugene-git |
Provides: | ugene |
Submitter: | WFCody |
Maintainer: | None |
Last Packager: | malacology |
Votes: | 3 |
Popularity: | 0.002446 |
First Submitted: | 2018-01-11 09:45 (UTC) |
Last Updated: | 2022-03-16 18:45 (UTC) |
Dependencies (32)
- desktop-file-utils (desktop-file-utils-git)
- glu (glu-git)
- libxtst
- qt5-script (qt5-script-git)
- qt5-svg (qt5-svg-git)
- qt5-webkit (qt5-webkit-git)
- qt5-websockets (qt5-websockets-git)
- bedtools (bedtools-git) (optional)
- blast+ (blast+-bin) (optional)
- bowtie (optional)
- bowtie2 (bowtie2-git, bowtie2-bin) (optional)
- bwa (optional)
- clustal-omega (optional)
- clustalw (optional)
- cufflinks (cufflinks-bin) (optional)
- diamond-aligner (optional)
- fastqc (optional)
- hmmer (hmmer3-2) (optional)
- java-runtime (java-gcj-compat, jre10, jdk6, jdk12-openj9-bin, zulu-12-bin, jre6, jre12, server-jre, jdk13-openj9-bin, jdk9-openj9-bin, jdk10, jdk11-openjdk-dcevm, jdk10-openj9-bin, jdk14-openj9-bin, jdk7, jre7, jre14, zulu-14-bin, amazon-corretto-15, jdk11-openjdk-dcevm-conflicts-fixed, zulu-embedded-jdk8, sapmachine-jdk-bin, jdk15-adoptopenjdk, amazon-corretto-16, jdk8-graalvm-bin, jdk16-graalvm-bin, jre8-openjdk-shenandoah, zulu-16-bin, jdk11-graalvm-ee-bin, jdk16-adoptopenjdk, jdk11-openj9-bin, zulu-jdk-fx-bin, jdk11-microsoft-openjdk, jdk16-microsoft-openjdk, zulu-embedded-jdk, jre-openj9, jdk11-msopenjdk-bin, jdk18-beta-temurin, zulu-13-bin, jdk8-arm, jre17-jetbrains, jre-jetbrains, amazon-corretto-17, amazon-corretto-18, amazon-corretto-8, amazon-corretto-11, zulu-8-bin, zulu-11-bin, zulu-17-bin, zulu-18-bin, zulu-15-bin, liberica-jdk-11-bin, liberica-jdk-11-lite-bin, liberica-jre-11-bin, jdk11-graalvm-bin, jdk17-graalvm-bin, jre11-jetbrains-imfix, jdk-arm, jdk-temurin, jdk11-temurin, jdk17-temurin, jre8-adoptopenjdk, java-openjdk-bin, jre8, jdk8, java-openjdk-loom-ea-bin, jdk8-dragonwell-bin, jdk11-dragonwell-bin, jdk17-dragonwell-bin, jdk8-openj9-bin, jdk-openj9-bin, zulu-jre-fx-bin, hmcl-zulu-bin, jdk7-j9-bin, jdk7r1-j9-bin, jdk8-j9-bin, jdk11-j9-bin, jdk-microsoft-openjdk, jdk-jetbrains, jre11-jbr-xdg, jre-jbr-xdg, liberica-jdk-8-full-bin, liberica-jdk-11-full-bin, liberica-jdk-17-full-bin, liberica-jdk-full-bin, liberica-jre-11-full-bin, jre-lts, jre, jre11, jdk18-openj9-bin, jdk-android-studio, jre12-openjdk, jre15-openjdk, jre16-openjdk, jre13-openjdk, jre14-openjdk, zulu-embedded-jdk11, jre-bcl, jdk-bcl, jre-openjdk-xdg, jre17-jetbrains-imfix, liberica-jre-8-full-bin, java-openjdk-ea-bin, jre-openjdk, jre11-openjdk, jre17-openjdk, jre8-openjdk) (optional)
- kraken (optional)
- Show 12 more dependencies...
Latest Comments
malacology commented on 2021-07-20 09:09 (UTC) (edited on 2021-07-20 09:10 (UTC) by malacology)
I contain more things already containing in ugene packages. Maybe it's shame to me.
Rhinoceros commented on 2021-07-20 00:22 (UTC)
It's actually
ugene -ui
, but that doesn't work either. You definitely shouldn't need sudo to run the program, nor need to chown. Otherwise other users wouldn't be able to use it! I think the problem is that/usr/share/ugene/ugenecl
and other files in/usr/share/ugene
are missing theo+x
permission. I've tested ugene-git, and this works perfectly. Also, the dependency list for ugene-git looks much more comprehensive!malacology commented on 2021-07-19 14:25 (UTC) (edited on 2021-07-19 14:26 (UTC) by malacology)
I think you need try to
ugene -gui
or try to use sudo to run or use chown to change the owner. Finally, you can try sudo ugene -guiRhinoceros commented on 2021-07-19 13:46 (UTC)
Still fails. Are you testing it yourself?
malacology commented on 2021-07-19 12:46 (UTC)
Try it now.
Rhinoceros commented on 2021-07-19 12:32 (UTC) (edited on 2021-07-19 12:32 (UTC) by Rhinoceros)
Ah okay. I didn't really understand what you meant by
Sorry, what's wrong with you?
malacology commented on 2021-07-19 12:20 (UTC)
I know, the dir structure has been changed
Rhinoceros commented on 2021-07-19 09:52 (UTC)
Thanks. It looks like you aren't building in a clean directory. You are missing the
==> Extracting sources...
stage (should be beforeEntering fakeroot environment
). You are also missing==> Starting package()...
. Presumably your directory already hadicons.tar.gz
for some reason.malacology commented on 2021-07-19 09:24 (UTC)
Sorry, what's wrong with you?
malacology commented on 2021-07-19 08:27 (UTC)
I found a error yesterday, I will fix it, also invite you as co-maintainer
Rhinoceros commented on 2021-07-19 08:16 (UTC)
Also the permissions are a bit wrong. Normal users can't run it because only root has executable permissions for
/usr/share/ugene/ugene
(symlinked from/usr/bin/ugene
). I changed that, then got permission denied for/usr/share/ugene/ugene
. There are probably more permissions that need to be fixed.Rhinoceros commented on 2021-07-19 08:08 (UTC)
I can't make this package. Looks like there is a missing file.
malacology commented on 2021-05-14 03:35 (UTC)
Now the version of the package is 38.1.
WFCody commented on 2018-11-09 08:35 (UTC)
Dear all, ugene finally can build with current (5.12) Qt! I am disowning the binary package since I am migrating to ugene-git.