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Package Details: ugene-bin 44.0-1
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Git Clone URL: | https://aur.archlinux.org/ugene-bin.git (read-only, click to copy) |
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Package Base: | ugene-bin |
Description: | A free cross-platform genome analysis suite (binary release) |
Upstream URL: | http://ugene.net |
Licenses: | GPL |
Conflicts: | ugene, ugene-cuda, ugene-git |
Provides: | ugene |
Submitter: | WFCody |
Maintainer: | ixeft |
Last Packager: | ixeft |
Votes: | 4 |
Popularity: | 0.000555 |
First Submitted: | 2018-01-11 09:45 (UTC) |
Last Updated: | 2022-09-01 12:51 (UTC) |
Dependencies (32)
- desktop-file-utils (desktop-file-utils-git)
- glu (glu-git)
- libxtst
- qt5-script (qt5-script-git)
- qt5-svg (qt5-svg-git)
- qt5-webkit (qt5-webkit-git, qt5-webkit-movableink-git)
- qt5-websockets (qt5-websockets-git)
- bedtools (bedtools-git) (optional)
- blast+ (blast+-bin) (optional)
- bowtie (optional)
- bowtie2 (bowtie2-git, bowtie2-bin) (optional)
- bwa (optional)
- clustal-omega (optional)
- clustalw (optional)
- cufflinks (cufflinks-bin) (optional)
- diamond-aligner (optional)
- fastqc (optional)
- hmmer (hmmer3-2) (optional)
- java-runtime (java-gcj-compat, jre10, jdk12-openj9-bin, zulu-12-bin, jre6, jre12, server-jre, jdk13-openj9-bin, jdk9-openj9-bin, jdk10, jdk10-openj9-bin, jdk14-openj9-bin, jdk7, jre7, zulu-14-bin, amazon-corretto-15, zulu-embedded-jdk8, sapmachine-jdk-bin, amazon-corretto-16, jdk8-graalvm-bin, jdk16-graalvm-bin, jre8-openjdk-shenandoah, zulu-16-bin, jdk16-adoptopenjdk, jdk16-microsoft-openjdk, jdk11-msopenjdk-bin, jdk18-beta-temurin, jdk8-arm, jre17-jetbrains, liberica-jdk-11-bin, liberica-jdk-11-lite-bin, liberica-jre-11-bin, jre11-jetbrains-imfix, java-openjdk-loom-ea-bin, jdk7-j9-bin, jdk7r1-j9-bin, jdk8-j9-bin, jdk11-j9-bin, jre11-jbr-xdg, jre16-openjdk, jre13-openjdk, jre14-openjdk, jre-bcl, jdk-bcl, amazon-corretto-18, zulu-18-bin, zulu-13-bin, jre15, jre14, jre13, jre16, bishengjdk-17, bishengjre-17, jdk-arm, jdk11-openj9-bin, jdk-openj9-bin, jre-jbr-xdg, jre18-openjdk, jdk18-openj9-bin, jdk-android-studio, amazon-corretto-19-bin, zulu-19-bin, jdk19-graalvm-bin, liberica-jre-11-full-bin, jdk19-graalvm-ee-bin, jdk13-openjdk-bin, zulu-embedded-jdk, jre8-openjdk-xdg, jre17-openjdk-xdg, jre15-openjdk, zulu-embedded-jdk11, liberica-jre-8-full-bin, jdk11-graalvm-bin, jdk18-temurin, jre19-openjdk, jdk11-microsoft-openjdk, jre-openj9, jdk11-graalvm-ee-bin, zulu-jre-fx-bin, jre17-jetbrains-imfix, jdk11-openjdk-dcevm, jre12-openjdk, jdk8-dragonwell-extended, jdk-jetbrains, jdk8-dragonwell-extended-bin, jdk8-dragonwell-standard-bin, jdk11-dragonwell-extended-bin, jdk11-dragonwell-standard-bin, jdk11-jetbrains-bin, jdk8-openj9-bin, jdk17-dragonwell-standard-bin, amazon-corretto-8, zulu-8-bin, zulu-20-bin, zulu-jdk-fx-bin, jdk-temurin, jdk17-graalvm-ee-bin, jdk20-graalvm-ee-bin, liberica-jdk-8-full-bin, jdk20-graalvm-bin, jdk17-graalvm-bin, mandrel-bin, jre-lts, jdk17-zulu-prime-bin, jdk8-graalvm-ee-bin, jdk8-aarch64, jdk8-temurin, jre17, jre8-adoptopenjdk, liberica-jdk-11-full-bin, liberica-jdk-17-full-bin, amazon-corretto-20-bin, amazon-corretto-17, zulu-15-bin, jdk8, jre8, jdk21-jetbrains-bin, jre21-jetbrains-imfix, amazon-corretto-11, jdk17-jetbrains-bin, jdk-microsoft-openjdk, jdk17-openj9-bin, jdk20-openj9-bin, java-openjdk-bin, zulu-21-bin, amazon-corretto-21-bin, jre11, liberica-jdk-full-bin, jre-openjdk-xdg, jdk11-temurin, jdk17-temurin, jre, zulu-11-bin, zulu-17-bin, jre-jetbrains, java-openjdk-ea-bin, jre-openjdk, jre11-openjdk, jre17-openjdk, jre8-openjdk) (optional)
- kraken (optional)
- Show 12 more dependencies...
Latest Comments
1 2 Next › Last »
Rhinoceros commented on 2021-07-20 00:22 (UTC)
It's actually
ugene -ui
, but that doesn't work either. You definitely shouldn't need sudo to run the program, nor need to chown. Otherwise other users wouldn't be able to use it! I think the problem is that/usr/share/ugene/ugenecl
and other files in/usr/share/ugene
are missing theo+x
permission. I've tested ugene-git, and this works perfectly. Also, the dependency list for ugene-git looks much more comprehensive!malacology commented on 2021-07-19 14:25 (UTC) (edited on 2021-07-19 14:26 (UTC) by malacology)
I think you need try to
ugene -gui
or try to use sudo to run or use chown to change the owner. Finally, you can try sudo ugene -guiRhinoceros commented on 2021-07-19 13:46 (UTC)
Still fails. Are you testing it yourself?
malacology commented on 2021-07-19 12:46 (UTC)
Try it now.
Rhinoceros commented on 2021-07-19 12:32 (UTC) (edited on 2021-07-19 12:32 (UTC) by Rhinoceros)
Ah okay. I didn't really understand what you meant by
Sorry, what's wrong with you?
malacology commented on 2021-07-19 12:20 (UTC)
I know, the dir structure has been changed
Rhinoceros commented on 2021-07-19 09:52 (UTC)
Thanks. It looks like you aren't building in a clean directory. You are missing the
==> Extracting sources...
stage (should be beforeEntering fakeroot environment
). You are also missing==> Starting package()...
. Presumably your directory already hadicons.tar.gz
for some reason.malacology commented on 2021-07-19 09:24 (UTC)
Sorry, what's wrong with you?
1 2 Next › Last »