Package Details: fiji-bin 2:20220414.1745-1

Git Clone URL: (read-only, click to copy)
Package Base: fiji-bin
Description: ImageJ distribution with a lot of plugins for scientific (especially biology related) image processing.
Upstream URL:
Licenses: GPL
Submitter: hottea
Maintainer: flomine
Last Packager: flomine
Votes: 21
Popularity: 0.000000
First Submitted: 2019-11-15 07:19 (UTC)
Last Updated: 2022-04-15 12:23 (UTC)

Latest Comments

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flomine commented on 2022-04-15 12:27 (UTC)

Package updated to 20220414-1745

heisenbugs commented on 2022-03-08 04:20 (UTC)

@lezsakdomi I have tested the newest version 20220222-1217. It seems to work!

lezsakdomi commented on 2022-01-16 17:39 (UTC)

@hottea as SPW_87 pointed out, using an older version works. I couldn't get any targz of the most recent version (20201104-1356) to work.

For me downloading the version before is totally fine, but I'm curious what the issue could be.

It seems like that the issue is not bound to the specific JRE used. I've almost reported this issue on Fiji github, but it seems like the is behind the tags on Fiji's github. In the recent tag it seems like they've just did something with the launcher, so I'll try those versions and hopefully post an update afterwards.

hottea commented on 2021-11-25 15:23 (UTC)

@lezsakdomi This pkg uses the the bundled jre, you might try the one with no-jre, check here. If still not working, contact the upstream for help.

lezsakdomi commented on 2021-11-25 14:39 (UTC)

Oracle JRE does not help either.

(I tried fiji --system --java-home /usr/lib/jvm/java-17-jdk)

lezsakdomi commented on 2021-11-25 14:23 (UTC) (edited on 2021-11-25 14:26 (UTC) by lezsakdomi)

I get the same error when starting it with fiji --system or without.

I have OpenJDK 17.0.1+12

fiji --ij1 works though.

SPW_87 commented on 2021-08-29 17:33 (UTC)

@iosonofabio I am getting the same error. The previous version 20201029-1752 works fine though.

From what I can tell the issue seems to be with the jre that is bundled with Fiji, as it looks like it was changed between these two versions. 20201029-1752 uses jdk1.8.0_172 and 20201104-1356 uses zulu8.48.0.53-ca-fx-jdk8.0.265-linux_x64.

hottea commented on 2021-08-25 07:58 (UTC)

fiji-bin uses a bundled jre, not the one from your system. You might need to check your jre config.

iosonofabio commented on 2021-08-25 04:43 (UTC)

Thanks for maintaining the package. I get a Java error after launching:

Error while executing the main() method of class 'net.imagej.Main': java.lang.NullPointerException: Cannot invoke "net.imagej.legacy.LegacyService.getIJ1Helper()" because "this.legacyService" is null

(among many lines of traceback).

I have:

jre-openjdk 16.0.2.u7-1 jre 16.0.2-1

as JRE providers. Would you know what's wrong?

Thank you Fabio

hello commented on 2021-02-12 21:30 (UTC)

It appears that the 20201104-2027 directory has disappeared and the latest version is instead 20201104-1356.


The current source responds with a 404.

Is it possible to manually intervene and correct this?