Package Details: fiji-bin 2:20240208.1017-1

Git Clone URL: (read-only, click to copy)
Package Base: fiji-bin
Description: ImageJ distribution with a lot of plugins for scientific (especially biology related) image processing.
Upstream URL:
Licenses: GPL
Submitter: hottea
Maintainer: flomine
Last Packager: flomine
Votes: 22
Popularity: 0.000016
First Submitted: 2019-11-15 07:19 (UTC)
Last Updated: 2024-02-09 17:59 (UTC)

Latest Comments

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archuser2021 commented on 2023-01-02 16:19 (UTC)

Does anyone else having horrible font rendering with this package? I tried to set menu font size to different values but it always reset to 0 points after restart.

hottea commented on 2022-12-17 11:07 (UTC)

@konung-yaropolk Then you should not install fiji with pacman, just download the binary tarball and extract it to home dir.

konung-yaropolk commented on 2022-12-17 10:09 (UTC)

Will be a better option to make the installation not into /opt, but to the user's home directory by the address /home/$USER/.local/opt. That will solve the problem with installation and updating plugins, which now requires running a program with sudo to do that, and it is not the safest way.

flomine commented on 2022-04-15 12:27 (UTC)

Package updated to 20220414-1745

heisenbugs commented on 2022-03-08 04:20 (UTC)

@lezsakdomi I have tested the newest version 20220222-1217. It seems to work!

lezsakdomi commented on 2022-01-16 17:39 (UTC)

@hottea as SPW_87 pointed out, using an older version works. I couldn't get any targz of the most recent version (20201104-1356) to work.

For me downloading the version before is totally fine, but I'm curious what the issue could be.

It seems like that the issue is not bound to the specific JRE used. I've almost reported this issue on Fiji github, but it seems like the is behind the tags on Fiji's github. In the recent tag it seems like they've just did something with the launcher, so I'll try those versions and hopefully post an update afterwards.

hottea commented on 2021-11-25 15:23 (UTC)

@lezsakdomi This pkg uses the the bundled jre, you might try the one with no-jre, check here. If still not working, contact the upstream for help.

lezsakdomi commented on 2021-11-25 14:39 (UTC)

Oracle JRE does not help either.

(I tried fiji --system --java-home /usr/lib/jvm/java-17-jdk)

lezsakdomi commented on 2021-11-25 14:23 (UTC) (edited on 2021-11-25 14:26 (UTC) by lezsakdomi)

I get the same error when starting it with fiji --system or without.

I have OpenJDK 17.0.1+12

fiji --ij1 works though.

SPW_87 commented on 2021-08-29 17:33 (UTC)

@iosonofabio I am getting the same error. The previous version 20201029-1752 works fine though.

From what I can tell the issue seems to be with the jre that is bundled with Fiji, as it looks like it was changed between these two versions. 20201029-1752 uses jdk1.8.0_172 and 20201104-1356 uses zulu8.48.0.53-ca-fx-jdk8.0.265-linux_x64.