AUR (en) - gwyddion

Git Clone URL:	https://aur.archlinux.org/gwyddion.git (read-only, click to copy)
Package Base:	gwyddion
Description:	A data visualization and processing tool for scanning probe miscroscopy (SPM, i.e. AFM, STM, MFM, SNOM/NSOM, ...) and profilometry, useful also for general image and 2D data analysis
Upstream URL:	http://gwyddion.net/
Licenses:	GPL
Submitter:	sirocco
Maintainer:	sirocco
Last Packager:	sirocco
Votes:	28
Popularity:	0.062805
First Submitted:	2008-11-30 12:29 (UTC)
Last Updated:	2024-04-09 06:03 (UTC)

Do you mean the free space on my machine? It is plenty of.

sirocco commented on 2022-01-30 06:06 (UTC)

@Tio

It would be nice to check the free space.

Tio commented on 2022-01-29 12:41 (UTC)

I get this error:

make[3]: Nothing to be done for 'install-exec-am'.
 /usr/bin/mkdir -p '/var/tmp/pamac-build-tio/gwyddion/pkg/gwyddion/usr/share/icons/hicolor/48x48/apps'
 /usr/bin/install -c -m 644 gwyddion.png '/var/tmp/pamac-build-tio/gwyddion/pkg/gwyddion/usr/share/icons/hicolor/48x48/apps'
 /usr/bin/mkdir -p '/var/tmp/pamac-build-tio/gwyddion/pkg/gwyddion/usr/share/gwyddion/pixmaps'
 /usr/bin/install -c -m 644 gwy_3d_base-24.png gwy_arithmetic-24.png gwy_binning-24.png gwy_bold-20.png gwy_cantilever-24.png gwy_color_range-24.png gwy_color_range_adaptive-24.png gwy_color_range_auto-24.png gwy_color_range_fixed-24.png gwy_color_range_full-24.png gwy_convolution-24.png gwy_convolve-24.png gwy_correct_affine-24.png gwy_correlation_mask-24.png gwy_correlation_length-24.png gwy_crop-24.png gwy_cross_profile-24.png gwy_curvature-24.png gwy_cwt-24.png gwy_data_measure-24.png gwy_deconvolve-24.png gwy_disconnected-24.png gwy_distance-24.png gwy_distance_transform-24.png gwy_distribution_angle-24.png gwy_distribution_slope-24.png gwy_dwt-24.png gwy_edge-24.png gwy_enforce_distribution-24.png gwy_entropy-24.png gwy_extend-24.png gwy_extract_path-24.png gwy_facet_analysis-24.png gwy_facet_measure-24.png gwy_facet_level-24.png gwy_favourite-24.png gwy_fft-24.png gwy_fft_2d-24.png gwy_fft_filter_1d-24.png gwy_fft_filter_2d-24.png '/var/tmp/pamac-build-tio/gwyddion/pkg/gwyddion/usr/share/gwyddion/pixmaps'
 /usr/bin/install -c -m 644 gwy_filter-24.png gwy_find_peaks-24.png gwy_fit_shape-24.png gwy_fix_zero-24.png gwy_flip_diagonally-24.png gwy_flip_horizontally-24.png gwy_flip_vertically-24.png gwy_fractal-24.png gwy_fractal_measure-24.png gwy_fractal_correction-24.png gwy_frequency_split-24.png gwy_gl_material-16.png gwy_gradient_horizontal-24.png gwy_gradient_vertical-24.png gwy_grain_correlation-24.png gwy_grain_exscribed_circle-24.png gwy_grain_inscribed_circle-24.png gwy_grains-24.png gwy_grains_edge-24.png gwy_grains_edge_remove-24.png gwy_grains_graph-24.png gwy_grains_measure-24.png gwy_grains_otsu-24.png gwy_grains_remove-24.png gwy_grains_statistics-24.png gwy_grains_water-24.png gwy_graph-24.png gwy_graph_align-24.png gwy_graph_cut-24.png gwy_graph_dos-24.png gwy_graph_export_ascii-24.png gwy_graph_export_png-24.png gwy_graph_export_vector-24.png gwy_graph_fd-24.png gwy_graph_filter-24.png gwy_graph_function-24.png gwy_graph_halfgauss-24.png gwy_graph_level-24.png gwy_graph_measure-24.png gwy_graph_palette-24.png '/var/tmp/pamac-build-tio/gwyddion/pkg/gwyddion/usr/share/gwyddion/pixmaps'
 /usr/bin/install -c -m 644 gwy_graph_pointer-24.png gwy_graph_ruler-24.png gwy_graph_statistics-24.png gwy_graph_terrace_measure-24.png gwy_graph_vertical-24.png gwy_graph_zoom_fit-24.png gwy_graph_zoom_in-24.png gwy_graph_zoom_out-24.png gwy_hough-24.png gwy_immerse-24.png gwy_iso_roughness-24.png gwy_image_relation-24.png gwy_italic-20.png gwy_less-24.png gwy_level-24.png gwy_level_flatten_base-24.png gwy_level_median-24.png gwy_level_triangle-24.png gwy_light_rotate-24.png gwy_limit_range-24.png gwy_line_level-24.png gwy_load_debug-20.png gwy_load_info-20.png gwy_load_warning-20.png gwy_local_slope-24.png gwy_logscale_horizontal-24.png gwy_logscale_vertical-24.png gwy_mark_outliers-24.png gwy_mark_scars-24.png gwy_mark_with-24.png gwy_mask-16.png gwy_mask-24.png gwy_mask_add-24.png gwy_mask_circle-24.png gwy_mask_circle_exclusive-24.png gwy_mask_circle_inclusive-24.png gwy_mask_distribute-24.png gwy_mask_editor-24.png gwy_mask_exclude-24.png gwy_mask_exclude_circle-24.png '/var/tmp/pamac-build-tio/gwyddion/pkg/gwyddion/usr/share/gwyddion/pixmaps'
 /usr/bin/install -c -m 644 gwy_mask_extract-24.png gwy_mask_fill_draw-24.png gwy_mask_fill_erase-24.png gwy_mask_grow-24.png gwy_mask_intersect-24.png gwy_mask_invert-24.png gwy_mask_line-24.png gwy_mask_morph-24.png gwy_mask_paint_draw-24.png gwy_mask_paint_erase-24.png gwy_mask_rect_exclusive-24.png gwy_mask_rect_inclusive-24.png gwy_mask_remove-24.png gwy_mask_set-24.png gwy_mask_shift-24.png gwy_mask_shrink-24.png gwy_mask_subtract-24.png gwy_mask_thin-24.png gwy_measure_lattice-24.png gwy_merge-24.png gwy_mfm_convert_to_force-24.png gwy_mfm_current_line-24.png gwy_mfm_field_find_shift-24.png gwy_mfm_field_shift-24.png gwy_mfm_parallel-24.png gwy_mfm_perpendicular-24.png gwy_more-24.png gwy_mutual_crop-24.png gwy_neural_apply-24.png gwy_neural_train-24.png gwy_next-24.png gwy_null_offsets-24.png gwy_palettes-16.png gwy_palettes-24.png gwy_path_level-24.png gwy_pointer_measure-24.png gwy_poly_distort-24.png gwy_polynom-24.png gwy_polynom_level-24.png gwy_previous-24.png '/var/tmp/pamac-build-tio/gwyddion/pkg/gwyddion/usr/share/gwyddion/pixmaps'
 /usr/bin/install -c -m 644 gwy_profile-24.png gwy_profile_multiple-24.png gwy_psdf_log_phi-24.png gwy_pygwy-24.png gwy_rasterize-24.png gwy_radial_profile-24.png gwy_rank_filter-24.png gwy_remove_under_mask-24.png gwy_revolve_arc-24.png gwy_revolve_sphere-24.png gwy_rotate_180-24.png gwy_rotate_3d-24.png gwy_rotate-24.png gwy_rotate_90_ccw-24.png gwy_rotate_90_cw-24.png gwy_scale-24.png gwy_scale_horizontally-24.png gwy_scale_vertically-24.png gwy_scars-24.png gwy_scientific_number_format-18.png gwy_selections-24.png gwy_shader-24.png gwy_spectrum-24.png gwy_spot_remove-24.png gwy_square_samples-24.png gwy_stat_quantities-24.png gwy_stitch-24.png gwy_straighten_path-24.png gwy_subscript-20.png gwy_superscript-20.png gwy_synthetic_anneal-24.png gwy_synthetic_ballistic_deposition-24.png gwy_synthetic_brownian_motion-24.png gwy_synthetic_columnar-24.png gwy_synthetic_diffusion-24.png gwy_synthetic_discs-24.png gwy_synthetic_domains-24.png gwy_synthetic_fibres-24.png gwy_synthetic_lattice-24.png gwy_synthetic_line_noise-24.png '/var/tmp/pamac-build-tio/gwyddion/pkg/gwyddion/usr/share/gwyddion/pixmaps'
 /usr/bin/install -c -m 644 gwy_synthetic_noise-24.png gwy_synthetic_objects-24.png gwy_synthetic_particles-24.png gwy_synthetic_pattern-24.png gwy_synthetic_phases-24.png gwy_synthetic_pileup-24.png gwy_synthetic_spectral-24.png gwy_synthetic_turing_pattern-24.png gwy_synthetic_waves-24.png gwy_terrace_measure-24.png gwy_tilt-24.png gwy_tip_dilation-24.png gwy_tip_erosion-24.png gwy_tip_estimation-24.png gwy_tip_indent_analyze-24.png gwy_tip_lateral_force-24.png gwy_tip_map-24.png gwy_tip_model-24.png gwy_tip_pid-24.png gwy_unrotate-24.png gwy_value_invert-24.png gwy_volume-24.png gwy_volume_arithmetic-24.png gwy_volume_calibrate-24.png gwy_volume_dimensions-24.png gwy_volume_fd-24.png gwy_volume_invert-24.png gwy_volume_kmeans-24.png gwy_volume_kmedians-24.png gwy_volume_line_stats-24.png gwy_volume_plane_stats-24.png gwy_volume_slice-24.png gwy_volume_swap_axes-24.png gwy_volumize-24.png gwy_volumize_layers-24.png gwy_wrap_value-24.png gwy_xy_denoise-24.png gwy_xyzize-24.png gwy_zero_maximum-24.png gwy_zero_mean-24.png '/var/tmp/pamac-build-tio/gwyddion/pkg/gwyddion/usr/share/gwyddion/pixmaps'
 /usr/bin/install -c -m 644 gwy_zoom_1_1-24.png gwy_zoom_fit-24.png gwy_zoom_in-24.png gwy_zoom_out-24.png cd_line.png cd_rline.png cd_rstep.png cd_step.png circle_down.png circle_up.png gwy_drift-24.png gwy_favourite-24.png gwy_gl_material-16.png gwy_gwyddion-32.png gwy_gwyddion-60.png gwy_psdf_log_phi-24.png gwy_psdf_section-24.png gwyddion.ico splash.png '/var/tmp/pamac-build-tio/gwyddion/pkg/gwyddion/usr/share/gwyddion/pixmaps'
make[3]: Leaving directory '/var/tmp/pamac-build-tio/gwyddion/src/gwyddion-2.60/pixmaps'
make[2]: Leaving directory '/var/tmp/pamac-build-tio/gwyddion/src/gwyddion-2.60/pixmaps'
make[1]: Leaving directory '/var/tmp/pamac-build-tio/gwyddion/src/gwyddion-2.60/pixmaps'
Making install in perl
make[1]: Entering directory '/var/tmp/pamac-build-tio/gwyddion/src/gwyddion-2.60/perl'
make[2]: Entering directory '/var/tmp/pamac-build-tio/gwyddion/src/gwyddion-2.60/perl'
make[2]: Nothing to be done for 'install-exec-am'.
/usr/bin/mkdir -p /var/tmp/pamac-build-tio/gwyddion/pkg/gwyddion/usr/share/man/man3
for i in Gwyddion::dump.3pm; do \
    /usr/bin/install -c -m 644 $i /var/tmp/pamac-build-tio/gwyddion/pkg/gwyddion/usr/share/man/man3; \
done
/usr/bin/install: cannot stat 'Gwyddion::dump.3pm': No such file or directory
make[2]: *** [Makefile:657: install-data-local] Error 1
make[2]: Leaving directory '/var/tmp/pamac-build-tio/gwyddion/src/gwyddion-2.60/perl'
make[1]: *** [Makefile:535: install-am] Error 2
make[1]: Leaving directory '/var/tmp/pamac-build-tio/gwyddion/src/gwyddion-2.60/perl'
make: *** [Makefile:623: install-recursive] Error 1
==> ERROR: A failure occurred in package().
    Aborting...

sirocco commented on 2021-05-20 07:51 (UTC) (edited on 2021-05-20 07:52 (UTC) by sirocco)

Temporary workaround: Disabled openexr with a patch.

(I didn't find option of /.configure for this.)

sirocco commented on 2021-05-20 02:19 (UTC) (edited on 2021-05-20 02:20 (UTC) by sirocco)

I tried adding openexr to makedepends. Problem still exists.

Apparently incompatibility with the version 3 of openexr. There is openexr2 in the AUR, but it conflicts with the openexr 3 from [extra]. I do not know what to do.

philo commented on 2021-05-19 19:06 (UTC)

https://bbs.archlinux.org/viewtopic.php?pid=1973721#p1973721

Kwazar380 commented on 2021-05-19 15:03 (UTC)

When I try to install the package by downloading snapshot, unpacking it and doing "makepkg -sri" I get the errors:


hdrimage.cc: In function ‘void exr_write_image(GwyDataField*, gchar*, const gchar*, const gchar*, GwyBitDepth, gdouble)’:
hdrimage.cc:712:24: error: variable ‘Imf_3_0::Header header’ has initializer but incomplete type
  712 |     Imf::Header header(xres, yres);
      |                        ^~~~
hdrimage.cc:713:31: error: ‘INCREASING_Y’ is not a member of ‘Imf’
  713 |     header.lineOrder() = Imf::INCREASING_Y;
      |                               ^~~~~~~~~~~~
hdrimage.cc: In function ‘const DoubleAttribute* exr_get_double_attr(const Imf_3_0::InputFile&, const gchar*)’:
hdrimage.cc:853:24: error: invalid use of incomplete type ‘const class Imf_3_0::Header’
  853 |         = infile.header().findTypedAttribute<Imf::DoubleAttribute>(name);
      |           ~~~~~~~~~~~~~^~
In file included from /usr/include/OpenEXR/ImfChannelList.h:17,
                 from hdrimage.cc:50:
/usr/include/OpenEXR/ImfForward.h:31:23: note: forward declaration of ‘class Imf_3_0::Header’
   31 | class IMF_EXPORT_TYPE Header;
      |                       ^~~~~~
hdrimage.cc:853:66: error: expected primary-expression before ‘>’ token
  853 |         = infile.header().findTypedAttribute<Imf::DoubleAttribute>(name);
      |                                                                  ^
hdrimage.cc: In function ‘const StringAttribute* exr_get_string_attr(const Imf_3_0::InputFile&, const gchar*)’:
hdrimage.cc:866:24: error: invalid use of incomplete type ‘const class Imf_3_0::Header’
  866 |         = infile.header().findTypedAttribute<Imf::StringAttribute>(name);
      |           ~~~~~~~~~~~~~^~

  914 |     Imath::Box2i dw = infile.header().dataWindow();
      |                       ~~~~~~~~~~~~~^~
In file included from /usr/include/OpenEXR/ImfChannelList.h:17,
                 from hdrimage.cc:50:
/usr/include/OpenEXR/ImfForward.h:31:23: note: forward declaration of ‘class Imf_3_0::Header’
   31 | class IMF_EXPORT_TYPE Header;
      |                       ^~~~~~
hdrimage.cc:932:53: error: invalid use of incomplete type ‘const class Imf_3_0::Header’
  932 |     const Imf::ChannelList &channels = infile.header().channels();
      |                                        ~~~~~~~~~~~~~^~
In file included from /usr/include/OpenEXR/ImfChannelList.h:17,
                 from hdrimage.cc:50:
/usr/include/OpenEXR/ImfForward.h:31:23: note: forward declaration of ‘class Imf_3_0::Header’
   31 | class IMF_EXPORT_TYPE Header;
      |                       ^~~~~~
hdrimage.cc:932:53: error: invalid use of incomplete type ‘const class Imf_3_0::Header’
  932 |     const Imf::ChannelList &channels = infile.header().channels();
      |                                        ~~~~~~~~~~~~~^~
In file included from /usr/include/OpenEXR/ImfChannelList.h:17,
                 from hdrimage.cc:50:
/usr/include/OpenEXR/ImfForward.h:31:23: note: forward declaration of ‘class Imf_3_0::Header’
   31 | class IMF_EXPORT_TYPE Header;
      |                       ^~~~~~

I couldn't find the solution in the web.

James-T commented on 2021-03-19 11:38 (UTC)

As the package appears to have been updated yesterday, please update the release number so that yay etc. are able to recognize it.

SibrenVasse commented on 2021-03-18 12:43 (UTC)

libunique was dropped from the official repos.

Arch Linux User Repository

Search Criteria

Package Details: gwyddion 2.65-2

Package Actions

Dependencies (18)

Required by (1)

Sources (2)

Latest Comments

Tio commented on 2022-01-30 10:50 (UTC)