Package Details: igv 2.18.4-1

Git Clone URL: https://aur.archlinux.org/igv.git (read-only, click to copy)
Package Base: igv
Description: High-performance visualization tool for interactive exploration of large, integrated genomic datasets. From Broad Institute.
Upstream URL: http://www.broadinstitute.org/software/igv/home
Licenses: MIT
Submitter: decryptedepsilon
Maintainer: balwierz (Rhinoceros)
Last Packager: Rhinoceros
Votes: 14
Popularity: 0.000001
First Submitted: 2014-03-23 21:07 (UTC)
Last Updated: 2024-10-05 02:27 (UTC)

Pinned Comments

Rhinoceros commented on 2024-01-08 09:29 (UTC)

As of igv 2.17.0, upstream is now compiling with Java 17, so you can uninstall Java 11 now if you have no other use for it, e.g. sudo pacman -Rns jre11-openjdk jre11-openjdk-headless.

Latest Comments

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Rhinoceros commented on 2019-04-24 10:17 (UTC)

Thanks for adding me @balwierz. I've updated to the newest version, and fixed the licence too. Cheers.

balwierz commented on 2019-04-22 16:47 (UTC)

Update to 2.5.1. Now it requires java 11. Package process removes bundled java. New icon. New High Resolution Screen mode.

Rhinoceros commented on 2019-04-20 23:43 (UTC)

@balwierz Could you please update this package? It's currently lagging 9 versions behind, from ~8 months ago. I'm happy to be a (co-)maintainer, if you like.

Rhinoceros commented on 2018-07-05 01:22 (UTC)

Thanks for the adoption and quick fix, @balwierz.

haawda commented on 2018-07-03 20:19 (UTC)

I am in vacation, orphaning.

balwierz commented on 2018-07-03 16:07 (UTC)

In addition to Rhinoceros' comment, since igv depends on a specific java version (8) it is better to use aur/archlinux-java-run instead of pure java call.

Rhinoceros commented on 2018-07-03 05:44 (UTC)

The PKGBUILD is totally broken after the update to 2.4.11-1

/tmp/igv/PKGBUILD: line 25: cd: IGV_2.4.11: No such file or directory

So I fixed the PKGBUILD to point to the correct directory:

cd igv-${_pkgver}

But still, there is a missing file.

install: cannot stat 'igv.jar': No such file or directory

Rhinoceros commented on 2017-05-19 00:36 (UTC)

Thanks @haawda. The new checksum works fine for me. (I'm not sure why it differs from the one I posted previously, but it's all good now anyway.)

Rhinoceros commented on 2017-05-19 00:13 (UTC)

Maybe @haawda's download was corrupted? Could you please try to redownload and recalculate the checksum? (I tried thrice and consistently got a different checksum to @haawda.)

gokcen commented on 2017-05-18 15:22 (UTC)

Same checksum error here...

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