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Package Details: petsc-git 3.18.1.r24.g1f6a6395d11-1
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Git Clone URL: | https://aur.archlinux.org/petsc-git.git (read-only, click to copy) |
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Package Base: | petsc-git |
Description: | Portable, extensible toolkit for scientific computation |
Upstream URL: | https://petsc.org |
Licenses: | custom:BSD-2-clause |
Conflicts: | petsc |
Provides: | petsc, petsc4py |
Submitter: | heitzmann |
Maintainer: | carlosal1015 |
Last Packager: | carlosal1015 |
Votes: | 2 |
Popularity: | 0.000000 |
First Submitted: | 2019-02-05 14:41 (UTC) |
Last Updated: | 2022-11-02 03:36 (UTC) |
Dependencies (36)
- eigen (eigen-gitAUR)
- fftw (fftw-amdAUR)
- lapack (aocl-libflame-aoccAUR, blas-mklAUR, lapack-gitAUR, atlas-lapackAUR, blas-aocl-gccAUR, blas-aocl-aoccAUR, openblas-lapackAUR, aocl-libflameAUR, blas-openblas)
- openmpi (openmpi-gitAUR)
- python-mpi4py (python-mpi4py-intelAUR)
- python-numpy (python-numpy-flameAUR, python-numpy-mkl-binAUR, python-numpy-gitAUR, python-numpy-mklAUR)
- zlib (zlib-ng-compat-gitAUR, zlib-gitAUR, zlib-ng-compatAUR)
- chrpath (chrpath-gitAUR) (make)
- cmake (cmake-gitAUR) (make)
- cython (cython-gitAUR, cython0) (make)
- gcc (gccrs-gitAUR, gcc11AUR, gcc-gitAUR) (make)
- gcc-fortran (gccrs-fortran-gitAUR, gcc11-fortranAUR, gcc-fortran-gitAUR) (make)
- git (git-gitAUR) (make)
- hypreAUR (make)
- pkgconf (pkgconf-gitAUR) (make)
- sowing (make)
- boost (boost-gitAUR) (optional) – Free peer-reviewed portable C++ source libraries
- cgns (cgns-parallelAUR) (optional) – Recording and recovering computer data
- eigen (eigen-gitAUR) (optional) – Lightweight C++ template library for vector and matrix math
- fftw (fftw-amdAUR) (optional) – Fast-Fourier Transform
- Show 16 more dependencies...
Required by (26)
- coolfluid-svn (requires petsc)
- damask (requires petsc) (make)
- damask-grid (requires petsc)
- damask-grid (requires petsc) (make)
- damask-mesh (requires petsc)
- damask-mesh (requires petsc) (make)
- deal-ii (requires petsc) (optional)
- dolfin (requires petsc)
- dolfin-hpc (requires petsc)
- dolfinx (requires petsc)
- dolfinx-git (requires petsc)
- fenics-basix-git (requires petsc) (check)
- freefem (requires petsc) (optional)
- libmesh-petsc (requires petsc)
- petsc4foam (requires petsc)
- pism (requires petsc)
- precice (requires petsc)
- precice-git (requires petsc)
- python-basix-git (requires petsc)
- python-clawpack (requires petsc) (optional)
- Show 6 more...
Latest Comments
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killozap commented on 2019-09-30 14:06 (UTC)
petsc was moved to https://gitlab.com/petsc/petsc
jvellojin commented on 2019-04-05 16:54 (UTC) (edited on 2019-04-05 16:54 (UTC) by jvellojin)
On a fresh installed Arch, with openmpi frozen on version 3.x,fftw-mpi, I get the following error when building petsc-git:
/var/tmp/pamac-build-jesus/dolfin-git/src/dolfin/dolfin/la/PETScVector.cpp: En la función miembro ‘virtual void dolfin::PETScVector::gather(dolfin::GenericVector&, const std::vector<int>&) const’: /var/tmp/pamac-build-jesus/dolfin-git/src/dolfin/dolfin/la/PETScVector.cpp:753:10: error: ‘VecScatterCreateWithData’ no se declaró en este ámbito ierr = VecScatterCreateWithData(_x, from, _y.vec(), to, &scatter); ^~~~~~~~~~~~~~~~~~~~~~~~ /var/tmp/pamac-build-jesus/dolfin-git/src/dolfin/dolfin/la/PETScVector.cpp:753:10: nota: suggested alternative: ‘VecScatterCreateToZero’ ierr = VecScatterCreateWithData(_x, from, _y.vec(), to, &scatter); ^~~~~~~~~~~~~~~~~~~~~~~~ VecScatterCreateToZero make[2]: [dolfin/CMakeFiles/dolfin.dir/build.make:1935: dolfin/CMakeFiles/dolfin.dir/la/PETScVector.cpp.o] Error 1 make[2]: Se espera a que terminen otras tareas.... make[1]: [CMakeFiles/Makefile2:273: dolfin/CMakeFiles/dolfin.dir/all] Error 2 make: [Makefile:141: all] Error 2 ==> ERROR: Se produjo un fallo en build(). Cancelando...
linux_dream commented on 2019-02-19 20:32 (UTC)
Yeah, I've just tried that, but then it's scalapack's turn to yield the same build error... I guess the downgrade to openmpi 3 is by far the easiest solution for now.
heitzmann commented on 2019-02-19 20:24 (UTC)
Probably the same issue there... I don't believe you need pastix if you're ok with using superlu, so you might simply want to remove it from the list of downloaded packages for now.
linux_dream commented on 2019-02-19 20:15 (UTC)
Thanks for the tip heitzmann, but by switching to the next branch, I get the same build error with pastix instead of superlu_dist.
heitzmann commented on 2019-02-19 19:58 (UTC)
Yes, but the changes are still in branch next, and by default we use branch maint. You can modify the PKGBUILD to try out next and see if that works.
linux_dream commented on 2019-02-19 19:37 (UTC)
I see heitzmann, indeed, petsc also made a quick fix (because I reported it). However I still face the error:
TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:160) ************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
Downloaded superlu_dist could not be used. Please check install in /home/isaac/.cache/yay/petsc-git/src/petsc/arch-linux-c-opt
==> ERROR: A failure occurred in build().
Aborting... Error making: petsc-git
Damn...
heitzmann commented on 2019-02-19 09:31 (UTC)
It looks like superlu_dist is already updated. I guess it is only a matter of time until petsc also updates their version.
Mumps should be enabled in this version of petsc: it is set to be downloaded and installed by default. Personally I find Pastix better than Mumps, though. I've had issues with mumps in the past (bugs, maybe).
linux_dream commented on 2019-02-18 21:12 (UTC)
heitzmann, I have reported the error to petsc's Bitbucket repository: https://bitbucket.org/petsc/petsc/issues/260/compatibility-with-openmpi-4. Apparently the error is due to SuperLU that uses a deprecated function that OpenMPI 4 does not support anymore. I am told to try MUMPS instead of SuperLU. Would you happen to have an idea on how to enable MUMPS instead of SuperLU for the petsc compilation?
linux_dream commented on 2019-02-15 21:27 (UTC) (edited on 2019-02-17 13:51 (UTC) by linux_dream)
Thank you heitzmann, that indeed was the culprit. I hope petsc will get fixed soon! I also changed slepc for slepc-git.
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