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Package Details: petsc 3.23.1-1

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Git Clone URL:	https://aur.archlinux.org/petsc.git (read-only, click to copy)
Package Base:	petsc
Description:	Portable, extensible toolkit for scientific computation
Upstream URL:	https://petsc.org
Keywords:	computing scientific
Licenses:	BSD-2-Clause
Provides:	petsc4py
Submitter:	heitzmann
Maintainer:	MartinDiehl
Last Packager:	MartinDiehl
Votes:	20
Popularity:	0.58
First Submitted:	2018-02-24 11:36 (UTC)
Last Updated:	2025-05-04 08:54 (UTC)

Dependencies (29)

fftw-openmpi (fftw-amd^AUR)
gsl (gsl-git^AUR)
hdf5-openmpi
lapack (aocl-libflame-aocc^AUR, lapack-git^AUR, atlas-lapack^AUR, blas-aocl-gcc^AUR, blas-aocl-aocc^AUR, blas-mkl^AUR, openblas-lapack^AUR, aocl-libflame^AUR, blas-openblas)
libjpeg-turbo (mozjpeg-git^AUR, libjpeg-turbo-git^AUR, mozjpeg^AUR)
libyaml (libyaml-git^AUR)
netcdf-openmpi
openmpi (openmpi-git^AUR)
python-mpi4py (python-mpi4py-intel^AUR)
python-numpy (python-numpy-git^AUR, python-numpy1^AUR, python-numpy-mkl-bin^AUR, python-numpy-mkl-tbb^AUR, python-numpy-mkl^AUR)
suitesparse
superlu
zfp
zlib (zlib-ng-compat-git^AUR, zlib-git^AUR, zlib-ng-compat)
cmake (cmake3^AUR, cmake-git^AUR) (make)
cython (cython-git^AUR) (make)
gcc (gcc-git^AUR, gccrs-git^AUR, gcc-snapshot^AUR) (make)
gcc-fortran (gcc-fortran-git^AUR, gcc-fortran-snapshot^AUR) (make)
python-setuptools (make)
hypre^AUR (optional) – support for HYPRE
Show 9 more dependencies...

Required by (26)

Sources (2)

Pinned Comments

MartinDiehl commented on 2022-10-06 10:26 (UTC)

@jrohwer

When building PETSc (more specifically, petsc4py), one test (ex100 from ksp) will fail if a previous (major) version is installed. I could not figure out why this happens. The solution would be to build in a clean root (which is a little bit complicated due to dependency on other AUR packages) or simply uninstall the old version before.

Any help to solve this issue is welcomed.

Latest Comments

« First ‹ Previous 1 2 3 4 5 6 7 8 9 10 11 Next › Last »

exocortex commented on 2023-11-03 22:08 (UTC)

@MartinDiehl thank you! This was the first time I used pacman to downgrade something and it worked quite well :-)

MartinDiehl commented on 2023-11-02 14:21 (UTC)

@exocortex: This is a bug in SuiteSparse 7.3.0 (https://github.com/DrTimothyAldenDavis/SuiteSparse/issues/478). You either have to downgrade or uninstall it for the moment. Hopefully, SuiteSparse 7.3.1 is out soon.

exocortex commented on 2023-11-02 13:13 (UTC) (edited on 2023-11-02 13:13 (UTC) by exocortex)

installing petsc fails for me. I couldn't run a python script (simple tutorial) after I upgraded my computer because of some problem with libcholmod. I tried reinstalling petsc (and slepc) but now also during installation of petsc there's an error (this time in a file aijcholmod. My terminal output with the error is here:

         CC arch-linux-c-opt/obj/src/mat/impls/aij/seq/matrart.o
         CC arch-linux-c-opt/obj/src/mat/impls/aij/seq/symtranspose.o
         CC arch-linux-c-opt/obj/src/mat/impls/aij/seq/crl/crl.o
         CC arch-linux-c-opt/obj/src/mat/impls/aij/seq/cholmod/aijcholmod.o
In file included from /home/lukipuki/.cache/yay/petsc/src/petsc-3.20.0/include/petscsystypes.h:553,
                 from /home/lukipuki/.cache/yay/petsc/src/petsc-3.20.0/include/petscsys.h:43,
                 from /home/lukipuki/.cache/yay/petsc/src/petsc-3.20.0/include/petscvec.h:8,
                 from /home/lukipuki/.cache/yay/petsc/src/petsc-3.20.0/include/petscmat.h:6,
                 from /home/lukipuki/.cache/yay/petsc/src/petsc-3.20.0/include/petsc/private/matimpl.h:3,
                 from /home/lukipuki/.cache/yay/petsc/src/petsc-3.20.0/include/../src/mat/impls/aij/seq/aij.h:3,
                 from /home/lukipuki/.cache/yay/petsc/src/petsc-3.20.0/src/mat/impls/aij/seq/cholmod/aijcholmod.c:1:
/usr/include/cholmod.h:1902:12: error: expected ‘)’ before ‘__extension__’
 1902 |     void **I,       // integer block of memory (int32_t or int64_t)
      |            ^
In file included from /home/lukipuki/.cache/yay/petsc/src/petsc-3.20.0/include/../src/mat/impls/sbaij/seq/cholmod/cholmodimpl.h:43,
                 from /home/lukipuki/.cache/yay/petsc/src/petsc-3.20.0/src/mat/impls/aij/seq/cholmod/aijcholmod.c:2:
/usr/include/cholmod.h:1903:5: error: expected ‘;’, ‘,’ or ‘)’ before ‘void’
 1903 |     void **J,       // integer block of memory (int32_t or int64_t)
      |     ^~~~
make[3]: *** [gmakefile:197: arch-linux-c-opt/obj/src/mat/impls/aij/seq/cholmod/aijcholmod.o] Error 1
make[3]: *** Waiting for unfinished jobs....
         CC arch-linux-c-opt/obj/src/mat/impls/aij/seq/inode.o
         CC arch-linux-c-opt/obj/src/mat/impls/aij/seq/aijperm/aijperm.o
         CC arch-linux-c-opt/obj/src/mat/impls/aij/seq/matmatmult.o
make[3]: Leaving directory '/home/lukipuki/.cache/yay/petsc/src/petsc-3.20.0'
make[2]: *** [/home/lukipuki/.cache/yay/petsc/src/petsc-3.20.0/lib/petsc/conf/rules.doc:28: libs] Error 2
make[2]: Leaving directory '/home/lukipuki/.cache/yay/petsc/src/petsc-3.20.0'
**************************ERROR*************************************
  Error during compile, check arch-linux-c-opt/lib/petsc/conf/make.log
  Send it and arch-linux-c-opt/lib/petsc/conf/configure.log to petsc-maint@mcs.anl.gov
********************************************************************
make[1]: *** [makefile:45: all] Error 1
make: *** [GNUmakefile:9: all] Error 2
==> ERROR: A failure occurred in build().
    Aborting...
 -> error making: petsc-exit status 4
 -> Failed to install the following packages. Manual intervention is required:
petsc - exit status 4

MartinDiehl commented on 2023-10-14 11:38 (UTC)

@bred: Did you uninstall a previous PETSc installation?

bred commented on 2023-10-12 14:11 (UTC) (edited on 2023-10-12 14:15 (UTC) by bred)

I've this error in 1.20

 Error while running make check
 make[1]: *** [makefile:132: check] Error 1
 make: *** [GNUmakefile:17: check] Error 2

 -> error making: petsc-exit status 4
 -> Failed to install the following packages. Manual intervention is required: petsc - exit status 4

lahwaacz commented on 2023-09-26 06:14 (UTC)

Still getting the same error due to hypre 2.29.0-1 with petsc 3.19.4-2...

lahwaacz commented on 2023-08-04 05:50 (UTC)

I get the following error trying to build petsc 3.19.4-1 with hypre 2.29.0-1:

In file included from /build/petsc/src/petsc-3.19.4/include/petscsys.h:1086,
                 from /build/petsc/src/petsc-3.19.4/include/petscvec.h:9,
                 from /build/petsc/src/petsc-3.19.4/include/petscmat.h:7,
                 from /build/petsc/src/petsc-3.19.4/include/petscpc.h:7,
                 from /build/petsc/src/petsc-3.19.4/include/petscksp.h:7,
                 from /build/petsc/src/petsc-3.19.4/include/petsc/private/pcimpl.h:5,
                 from /build/petsc/src/petsc-3.19.4/src/ksp/pc/impls/hypre/hypre.c:6:
/build/petsc/src/petsc-3.19.4/src/ksp/pc/impls/hypre/hypre.c: In function ‘PCApply_HYPRE’:
/build/petsc/src/petsc-3.19.4/src/ksp/pc/impls/hypre/hypre.c:446:31: error: incompatible types when assigning to type ‘hypre_Error’ from type ‘int’
  446 |         hypre__global_error = 0;
      |                               ^
/build/petsc/src/petsc-3.19.4/include/petscerror.h:1738:7: note: in definition of macro ‘PetscStackCallExternalVoid’
 1738 |       __VA_ARGS__; \
      |       ^~~~~~~~~~~
/build/petsc/src/petsc-3.19.4/src/ksp/pc/impls/hypre/hypre.c: In function ‘PCApplyTranspose_HYPRE_BoomerAMG’:
/build/petsc/src/petsc-3.19.4/src/ksp/pc/impls/hypre/hypre.c:636:31: error: incompatible types when assigning to type ‘hypre_Error’ from type ‘int’
  636 |         hypre__global_error = 0;
      |                               ^
/build/petsc/src/petsc-3.19.4/include/petscerror.h:1738:7: note: in definition of macro ‘PetscStackCallExternalVoid’
 1738 |       __VA_ARGS__; \
      |       ^~~~~~~~~~~
make[3]: *** [gmakefile:195: arch-linux-c-opt/obj/ksp/pc/impls/hypre/hypre.o] Error 1
make[3]: *** Waiting for unfinished jobs....
         CC arch-linux-c-opt/obj/ksp/pc/impls/mpi/pcmpi.o
         CC arch-linux-c-opt/obj/ksp/pc/impls/vpbjacobi/vpbjacobi.o
         CC arch-linux-c-opt/obj/ksp/pc/impls/jacobi/jacobi.o
         CC arch-linux-c-opt/obj/ksp/pc/impls/mg/fmg.o
         CC arch-linux-c-opt/obj/ksp/ksp/interface/itfunc.o
         CC arch-linux-c-opt/obj/ksp/pc/impls/gamg/geo.o
         CC arch-linux-c-opt/obj/ksp/pc/impls/deflation/deflation.o
         CC arch-linux-c-opt/obj/ksp/pc/impls/gamg/classical.o
         CC arch-linux-c-opt/obj/ksp/pc/impls/is/nn/nn.o
         CC arch-linux-c-opt/obj/ksp/pc/impls/is/pcis.o
         CC arch-linux-c-opt/obj/ksp/pc/impls/hmg/hmg.o
         CC arch-linux-c-opt/obj/ksp/pc/impls/wb/wb.o
         CC arch-linux-c-opt/obj/ksp/pc/impls/gamg/agg.o
         CC arch-linux-c-opt/obj/ksp/pc/impls/mg/gdsw.o
         CC arch-linux-c-opt/obj/ksp/pc/impls/ml/ml.o
         CC arch-linux-c-opt/obj/vec/is/sf/impls/basic/sfpack.o
         CC arch-linux-c-opt/obj/ksp/pc/impls/asm/asm.o
         CC arch-linux-c-opt/obj/ksp/pc/impls/bjacobi/bjacobi.o
         CC arch-linux-c-opt/obj/ksp/pc/impls/gamg/gamg.o
make[3]: Leaving directory '/build/petsc/src/petsc-3.19.4'
make[2]: *** [/build/petsc/src/petsc-3.19.4/lib/petsc/conf/rules.doc:28: libs] Error 2
make[2]: Leaving directory '/build/petsc/src/petsc-3.19.4'
**************************ERROR*************************************
  Error during compile, check arch-linux-c-opt/lib/petsc/conf/make.log
  Send it and arch-linux-c-opt/lib/petsc/conf/configure.log to petsc-maint@mcs.anl.gov
********************************************************************
make[1]: *** [makefile:45: all] Error 1
make: *** [GNUmakefile:9: all] Error 2

carlosal1015 commented on 2023-06-08 20:20 (UTC)

now is passing the tests with superlu_dist 8.1.2-2 https://aur.archlinux.org/cgit/aur.git/commit/?h=superlu_dist&id=b800207ab252d45445d482e06cf56e1ab97c2d3c