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Package Details: python-pybedtools 0.10.0-1
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| Git Clone URL: | https://aur.archlinux.org/python-pybedtools.git (read-only, click to copy) |
|---|---|
| Package Base: | python-pybedtools |
| Description: | python wrapper for BEDTools bioinformatics suite |
| Upstream URL: | https://github.com/daler/pybedtools |
| Licenses: | GPL2 |
| Conflicts: | python-pyvcf |
| Provides: | python-pyvcf |
| Submitter: | clintval |
| Maintainer: | kbipinkumar (BioArchLinuxBot) |
| Last Packager: | BioArchLinuxBot |
| Votes: | 0 |
| Popularity: | 0.000000 |
| First Submitted: | 2017-12-19 17:32 (UTC) |
| Last Updated: | 2024-04-10 00:02 (UTC) |
Dependencies (23)
- bedtoolsAUR
- gcc-libs (gcc-libs-gitAUR, gccrs-libs-gitAUR, gcc11-libsAUR, gcc-libs-snapshotAUR)
- glibc (glibc-gitAUR, glibc-linux4AUR, glibc-eacAUR, glibc-eac-binAUR, glibc-eac-rocoAUR)
- python (python37AUR, python311AUR, python310AUR)
- python-numpy (python-numpy-flameAUR, python-numpy-gitAUR, python-numpy1AUR, python-numpy-mkl-binAUR, python-numpy-mklAUR, python-numpy-mkl-tbbAUR)
- python-pandas
- python-pysamAUR (python-pysamAUR)
- python-six
- python-yaml (python-yaml-gitAUR)
- zlib (zlib-ng-compat-gitAUR, zlib-gitAUR, zlib-ng-compat)
- cython (cython-gitAUR, cython0AUR) (make)
- python-build (make)
- python-installer (python-installer-gitAUR) (make)
- python-numpydoc (make)
- python-pyaml (make)
- python-pytest (make)
- python-setuptools (make)
- python-sphinx (python-sphinx-gitAUR) (make)
- python-wheel (make)
- python-yaml (python-yaml-gitAUR) (make)
- htslibAUR (htslib-gitAUR) (optional) – for working with SAM/BAM/CRAM files
- python-matplotlib (python-matplotlib-gitAUR) (optional) – for plotting genomic intervals
- ucsc-genome-browser (optional) – for bedgraph to bigwig conversions
Required by (3)
- flair
- python-gffutils (optional)
- python-rgt (requires python-pyvcf)