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Package Details: r-rsamtools 2.18.0-1
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Git Clone URL: | https://aur.archlinux.org/r-rsamtools.git (read-only, click to copy) |
---|---|
Package Base: | r-rsamtools |
Description: | Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import |
Upstream URL: | https://bioconductor.org/packages/release/bioc/html/Rsamtools.html |
Licenses: | Artistic2.0 |
Submitter: | greyltc |
Maintainer: | greyltc (peippo) |
Last Packager: | peippo |
Votes: | 0 |
Popularity: | 0.000000 |
First Submitted: | 2019-02-09 14:35 (UTC) |
Last Updated: | 2023-11-02 10:59 (UTC) |
Dependencies (23)
- r (r352AUR, r-mklAUR)
- r-biocgenericsAUR
- r-biocparallelAUR
- r-biostringsAUR
- r-bitopsAUR
- r-genomeinfodbAUR
- r-genomicrangesAUR
- r-irangesAUR
- r-rhtslibAUR
- r-s4vectorsAUR
- r-xvectorAUR
- r-zlibbiocAUR
- make (make-gitAUR) (make)
- r-biocstyleAUR (optional)
- r-bsgenome.hsapiens.ucsc.hg19AUR (optional)
- r-genomicalignmentsAUR (optional)
- r-genomicfeaturesAUR (optional)
- r-knitrAUR (optional)
- r-rnaseqdata.hnrnpc.bam.chr14 (optional)
- r-runitAUR (optional)
- Show 3 more dependencies...
Required by (226)
- r-alabaster.files
- r-alabaster.vcf
- r-allelicimbalance
- r-alpine
- r-aneufinder
- r-annmap
- r-annotationhub (optional)
- r-annotationhubdata
- r-apalyzer
- r-appreci8r
- r-aspli
- r-atacseqqc
- r-atacseqtfea
- r-atena
- r-baalchip
- r-badregionfinder
- r-bambu
- r-bamsignals (optional)
- r-basespacer (optional)
- r-bbcanalyzer
- Show 206 more...
Latest Comments
peippo commented on 2022-05-08 12:58 (UTC)
This now builds fine with r>=4.2.0-2 from the community repo
peippo commented on 2022-05-01 14:26 (UTC)
It seems to be connected to R being built with LTO. For the time being, please build your own R using
options=(!lto)
, then rebuildr-rhtslib
andr-rsamtools
.I filed a bug report with the
r
package in the community repo, hope it’s picked up quickly: https://bugs.archlinux.org/task/74609malacology commented on 2022-04-29 23:45 (UTC)
You can see similar issue here
https://github.com/BioArchLinux/Packages/issues/40
peippo commented on 2022-04-29 14:48 (UTC)
Waiting for upstream to suggest ways to install the new version; see https://github.com/Bioconductor/Rsamtools/issues/36
dviktor commented on 2022-01-17 20:13 (UTC)
I'm leaving maintenance and support for this package in favor of new repository. You can install pre-built packages from my repo
malacology commented on 2021-12-24 23:02 (UTC)