Arch Linux User Repository

Hi folks, now there are some issues with HDF5 latest API, let's await for a patch. We recommend use scilab-bin until this issue will be fixed.

https://gitlab.com/scilab/scilab/-/issues/17230

@eolianoe : thanks for your answer, I had already tried to downgrade HDF5 without success. Is there anything that I could try ?

@eolianoe: I am working on a build with pure makepkg. How can I provide the full build log? I have sent it to a text file. I have never successfully installed Scilab within Manjaro. There may be artifacts from failed attempts.

@mcrai: please paste your log somewhere in order to be more readable. Regarding to your error, does scilab is already installed? If so, remove it to make the upgrade. You should use pure makepkg to build such big package, yaourt may break the build. @Goby: your error is probably linked to the fact that scilab is not fully compatible with new hdf5 and for now, an unofficial patch is applied to make scilab works. Maybe this patch needs to be improved to fix your error.

continuing my comment a few moments ago: Within the build log i found this section containing an error: /bin/sh ../../libtool --tag=CXX --mode=link g++ -DNDEBUG -fno-stack-protector -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -version-number 6:0:0 -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -Wl,--no-as-needed -o libscixcos.la -rpath /usr/lib/scilab sci_gateway/cpp/libscixcos_la-sci_Xcos.lo sci_gateway/cpp/libscixcos_la-sci_warnBlockByUID.lo sci_gateway/cpp/libscixcos_la-sci_closeXcosFromScilab.lo sci_gateway/cpp/libscixcos_la-sci_xcosCellCreated.lo sci_gateway/cpp/libscixcos_la-sci_xcosUpdateBlock.lo sci_gateway/cpp/libscixcos_la-sci_xcosDiagramToScilab.lo sci_gateway/cpp/libscixcos_la-sci_xcosPalLoad.lo sci_gateway/cpp/libscixcos_la-sci_xcosPalCategoryAdd.lo sci_gateway/cpp/libscixcos_la-sci_xcosPalDelete.lo sci_gateway/cpp/libscixcos_la-sci_xcosPalMove.lo sci_gateway/cpp/libscixcos_la-sci_xcosPalEnable.lo sci_gateway/cpp/libscixcos_la-sci_xcosPalDisable.lo sci_gateway/cpp/libscixcos_la-sci_xcosPalGenerateIcon.lo sci_gateway/cpp/libscixcos_la-sci_xcosPalGet.lo sci_gateway/cpp/libscixcos_la-sci_xcosConfigureXmlFile.lo sci_gateway/cpp/libscixcos_la-sci_xcosAddToolsMenu.lo sci_gateway/cpp/libscixcos_la-sci_loadXcos.lo sci_gateway/cpp/libscixcos_la-sci_xcosSimulationStarted.lo libscixcos-algo.la ../../modules/scicos/libsciscicos.la ../../modules/commons/libscicommons.la ../../modules/jvm/libscijvm.la -lpthread -ldl -lcurses -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1/../../../../lib/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1/crtbeginS.o sci_gateway/cpp/.libs/libscixcos_la-sci_Xcos.o sci_gateway/cpp/.libs/libscixcos_la-sci_warnBlockByUID.o sci_gateway/cpp/.libs/libscixcos_la-sci_closeXcosFromScilab.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosCellCreated.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosUpdateBlock.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosDiagramToScilab.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosPalLoad.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosPalCategoryAdd.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosPalDelete.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosPalMove.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosPalEnable.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosPalDisable.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosPalGenerateIcon.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosPalGet.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosConfigureXmlFile.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosAddToolsMenu.o sci_gateway/cpp/.libs/libscixcos_la-sci_loadXcos.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosSimulationStarted.o -Wl,--whole-archive ./.libs/libscixcos-algo.a -Wl,--no-whole-archive -Wl,-rpath -Wl,/tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/scicos/.libs -Wl,-rpath -Wl,/tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/scicos_blocks/.libs -Wl,-rpath -Wl,/tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/commons/.libs -Wl,-rpath -Wl,/tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/jvm/.libs -Wl,-rpath -Wl,/usr/lib/scilab -L/tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/scicos/.libs -L/tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/scicos_blocks/.libs ../../modules/scicos/.libs/libsciscicos.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/scicos/.libs/libscisundials.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/scicos_blocks/.libs/libsciscicos_blocks.so -lrt ../../modules/commons/.libs/libscicommons.so ../../modules/jvm/.libs/libscijvm.so -L/usr/lib/jvm/default/jre/lib/amd64 -L/usr/lib/jvm/default/jre/lib/amd64/server -lxml2 -lz -llzma -licui18n -licuuc -licudata -ljava -lverify -ljvm -lpthread -ldl -lcurses -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1 -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1/../../../../lib/crtn.o -march=x86-64 -mtune=generic -O2 -Wl,-O1 -Wl,--sort-common -Wl,--as-needed -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--no-as-needed -pthread -Wl,-soname -Wl,libscixcos.so.6 -o .libs/libscixcos.so.6.0.0 libtool: link: (cd ".libs" && rm -f "libscixcos.so.6" && ln -s "libscixcos.so.6.0.0" "libscixcos.so.6") libtool: link: (cd ".libs" && rm -f "libscixcos.so" && ln -s "libscixcos.so.6.0.0" "libscixcos.so") libtool: link: ( cd ".libs" && rm -f "libscixcos.la" && ln -s "../libscixcos.la" "libscixcos.la" ) Buildfile: /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/xcos/build.xml [taskdef] Could not load definitions from resource checkstyletask.properties. It could not be found. init: compile: jar: [jar] Building jar: /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/xcos/jar/org.scilab.modules.xcos.jar BUILD SUCCESSFUL Total time: 0 seconds make[3]: Leaving directory '/tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/xcos' make[2]: Leaving directory '/tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/xcos' Making all in mpi make[2]: Entering directory '/tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/mpi' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../modules/core/includes -Iincludes/ -Isrc/c/ -I../../modules/ast/includes/ast/ -I../../modules/ast/includes/exps/ -I../../modules/ast/includes/operations/ -I../../modules/ast/includes/parse/ -I../../modules/ast/includes/symbol/ -I../../modules/ast/includes/system_env/ -I../../modules/ast/includes/types/ -I../../modules/ast/includes/analysis/ -I../../modules/string/includes -I../../modules/dynamic_link/includes -I../../modules/output_stream/includes -I../../modules/localization/includes -I../../modules/api_scilab/includes -I../../modules/elementary_functions/includes -pthread -D_FORTIFY_SOURCE=2 -D_LARGEFILE64_SOURCE -DNDEBUG -m64 -fno-stack-protector -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -MT sci_gateway/c/libscimpi_la-sci_mpi_init.lo -MD -MP -MF sci_gateway/c/.deps/libscimpi_la-sci_mpi_init.Tpo -c -o sci_gateway/c/libscimpi_la-sci_mpi_init.lo `test -f 'sci_gateway/c/sci_mpi_init.c' || echo './'`sci_gateway/c/sci_mpi_init.c libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I../../modules/core/includes -Iincludes/ -Isrc/c/ -I../../modules/ast/includes/ast/ -I../../modules/ast/includes/exps/ -I../../modules/ast/includes/operations/ -I../../modules/ast/includes/parse/ -I../../modules/ast/includes/symbol/ -I../../modules/ast/includes/system_env/ -I../../modules/ast/includes/types/ -I../../modules/ast/includes/analysis/ -I../../modules/string/includes -I../../modules/dynamic_link/includes -I../../modules/output_stream/includes -I../../modules/localization/includes -I../../modules/api_scilab/includes -I../../modules/elementary_functions/includes -pthread -D_FORTIFY_SOURCE=2 -D_LARGEFILE64_SOURCE -DNDEBUG -m64 -fno-stack-protector -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -MT sci_gateway/c/libscimpi_la-sci_mpi_init.lo -MD -MP -MF sci_gateway/c/.deps/libscimpi_la-sci_mpi_init.Tpo -c sci_gateway/c/sci_mpi_init.c -fPIC -DPIC -o sci_gateway/c/.libs/libscimpi_la-sci_mpi_init.o

I have left comments before on 2017-05-21 and 2017-05-09. Problems persist and help is still appreciated. I have built with "yaourt scilab". This is the end of the bulid log: libtool: link: g++ -DNDEBUG -fno-stack-protector -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -pthread -Wl,-rpath -Wl,/usr/lib/openmpi -Wl,--enable-new-dtags -Wl,-O1 -Wl,--sort-common -Wl,--as-needed -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--no-as-needed -o .libs/scilab-bin modules/startup/src/cpp/scilab_bin-scilab.o modules/startup/src/c/scilab_bin-initMPI.o -pthread -Wl,-rpath -Wl,/usr/lib/openmpi -Wl,--enable-new-dtags -L/usr/lib/openmpi -lstdc++ -L/usr/lib/jvm/default/jre/lib/amd64 -L/usr/lib/jvm/default/jre/lib/amd64/server -L/lib -L/lib64 ./modules/.libs/libscilab-cli.so -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1 -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1/../../.. ./modules/console/.libs/libsciconsole.so ./modules/jvm/.libs/libscijvm.so ./modules/commons/.libs/libscicommons.so ./modules/.libs/libscilab.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/gui/.libs/libscigui.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/renderer/.libs/libscirenderer.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/graphics/.libs/libscigraphics.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/graphic_export/.libs/libscigraphic_export.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/console/.libs/libsciconsole.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/action_binding/.libs/libsciaction_binding.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/graphic_objects/.libs/libscigraphic_objects.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/scinotes/.libs/libsciscinotes.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/ui_data/.libs/libsciui_data.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/history_browser/.libs/libscihistory_browser.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/types/.libs/libscitypes-java.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/preferences/.libs/libscipreferences.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/external_objects_java/.libs/libsciexternal_objects_java.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/jvm/.libs/libscijvm.so -ljava -lverify -ljvm /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/helptools/.libs/libscihelptools.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/commons/.libs/libscicommons.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/tclsci/.libs/libscitclsci.so -ltk8.6 -ltcl8.6 /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/.libs/libscilab-cli.so -lcurl -lnghttp2 -lssh2 -lpsl -lssl -lcrypto -lgssapi_krb5 -lkrb5 -lk5crypto -lcom_err /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/functions/.libs/libscifunctions.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/call_scilab/.libs/libscicall_scilab.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/localization/.libs/libscilocalization.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/special_functions/.libs/libscispecial_functions.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/completion/.libs/libscicompletion.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/history_manager/.libs/libscihistory_manager.so -lpcreposix -lpcre /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/hdf5/.libs/libscihdf5.so -lhdf5 -lhdf5_hl -lfftw3 /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/statistics/.libs/libscistatistics.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/ast/.libs/libsciast.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/functions_manager/.libs/libscifunctions_manager.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/xml/.libs/libscixml.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/external_objects/.libs/libsciexternal_objects.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/slint/.libs/libscislint.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/coverage/.libs/libscicoverage.so -lxml2 -lz -llzma -licui18n -licuuc -licudata /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/mpi/.libs/libscimpi.so -lmpi /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/gui/.libs/libscigui-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/graphics/.libs/libscigraphics-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/graphic_export/.libs/libscigraphic_export-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/console/.libs/libsciconsole-minimal.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/action_binding/.libs/libsciaction_binding-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/jvm/.libs/libscijvm-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/xcos/.libs/libscixcos-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/graphic_objects/.libs/libscigraphic_objects-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/scinotes/.libs/libsciscinotes-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/ui_data/.libs/libsciui_data-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/history_browser/.libs/libscihistory_browser-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/commons/.libs/libscicommons-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/preferences/.libs/libscipreferences-cli.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/tclsci/.libs/libscitclsci-disable.so -lblas -llapack -lgfortran -lquadmath -lpthread -ldl -lcurses -lm -pthread -Wl,-rpath -Wl,/usr/lib/scilab g++ -DHAVE_CONFIG_H -I. -I./modules/core/includes -DWITHOUT_GUI -I./modules/ast/includes/ast/ -I./modules/ast/includes/exps/ -I./modules/ast/includes/operations/ -I./modules/ast/includes/parse/ -I./modules/ast/includes/symbol/ -I./modules/ast/includes/system_env/ -I./modules/ast/includes/types/ -I./modules/ast/includes/analysis/ -I./modules/console/includes/ -I./modules/output_stream/includes/ -I./modules/functions_manager/includes/ -I./modules/elementary_functions/includes/ -I./modules/fileio/includes/ -I./modules/string/includes/ -I./modules/history_manager/includes/ -I./modules/threads/includes/ -I./modules/api_scilab/includes/ -I./modules/localization/includes/ -I./modules/core/src/c/ -I./modules/dynamic_link/includes/ -I./modules/startup/src/c/ -pthread -pthread -D_FORTIFY_SOURCE=2 -DNDEBUG -fno-stack-protector -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -MT modules/startup/src/cpp/scilab_cli_bin-scilab.o -MD -MP -MF modules/startup/src/cpp/.deps/scilab_cli_bin-scilab.Tpo -c -o modules/startup/src/cpp/scilab_cli_bin-scilab.o `test -f 'modules/startup/src/cpp/scilab.cpp' || echo './'`modules/startup/src/cpp/scilab.cpp mv -f modules/startup/src/cpp/.deps/scilab_cli_bin-scilab.Tpo modules/startup/src/cpp/.deps/scilab_cli_bin-scilab.Po gcc -DHAVE_CONFIG_H -I. -I./modules/core/includes -DWITHOUT_GUI -I./modules/ast/includes/ast/ -I./modules/ast/includes/exps/ -I./modules/ast/includes/operations/ -I./modules/ast/includes/parse/ -I./modules/ast/includes/symbol/ -I./modules/ast/includes/system_env/ -I./modules/ast/includes/types/ -I./modules/ast/includes/analysis/ -I./modules/console/includes/ -I./modules/output_stream/includes/ -I./modules/functions_manager/includes/ -I./modules/elementary_functions/includes/ -I./modules/fileio/includes/ -I./modules/string/includes/ -I./modules/history_manager/includes/ -I./modules/threads/includes/ -I./modules/api_scilab/includes/ -I./modules/localization/includes/ -I./modules/core/src/c/ -I./modules/dynamic_link/includes/ -I./modules/startup/src/c/ -pthread -pthread -D_FORTIFY_SOURCE=2 -D_LARGEFILE64_SOURCE -DNDEBUG -m64 -fno-stack-protector -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -MT modules/startup/src/c/scilab_cli_bin-initMPI.o -MD -MP -MF modules/startup/src/c/.deps/scilab_cli_bin-initMPI.Tpo -c -o modules/startup/src/c/scilab_cli_bin-initMPI.o `test -f 'modules/startup/src/c/initMPI.c' || echo './'`modules/startup/src/c/initMPI.c mv -f modules/startup/src/c/.deps/scilab_cli_bin-initMPI.Tpo modules/startup/src/c/.deps/scilab_cli_bin-initMPI.Po /bin/sh ./libtool --tag=CXX --mode=link g++ -DNDEBUG -fno-stack-protector -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -pthread -Wl,-rpath -Wl,/usr/lib/openmpi -Wl,--enable-new-dtags -L/usr/lib/openmpi -lmpi -lstdc++ -lgfortran -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -Wl,--no-as-needed -o scilab-cli-bin modules/startup/src/cpp/scilab_cli_bin-scilab.o modules/startup/src/c/scilab_cli_bin-initMPI.o ./modules/libscilab-cli.la -lblas -llapack -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1 -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1/../../.. -lpthread -ldl -lcurses -lgfortran -lm -lquadmath -lpthread -ldl -lcurses -lm libtool: link: g++ -DNDEBUG -fno-stack-protector -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -pthread -Wl,-rpath -Wl,/usr/lib/openmpi -Wl,--enable-new-dtags -Wl,-O1 -Wl,--sort-common -Wl,--as-needed -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--no-as-needed -o .libs/scilab-cli-bin modules/startup/src/cpp/scilab_cli_bin-scilab.o modules/startup/src/c/scilab_cli_bin-initMPI.o -L/usr/lib/openmpi -lstdc++ ./modules/.libs/libscilab-cli.so -lcurl -lnghttp2 -lssh2 -lpsl -lssl -lcrypto -lgssapi_krb5 -lkrb5 -lk5crypto -lcom_err /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/functions/.libs/libscifunctions.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/call_scilab/.libs/libscicall_scilab.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/localization/.libs/libscilocalization.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/special_functions/.libs/libscispecial_functions.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/completion/.libs/libscicompletion.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/history_manager/.libs/libscihistory_manager.so -lpcreposix -lpcre /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/hdf5/.libs/libscihdf5.so -lhdf5 -lhdf5_hl -lfftw3 /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/statistics/.libs/libscistatistics.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/ast/.libs/libsciast.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/functions_manager/.libs/libscifunctions_manager.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/xml/.libs/libscixml.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/external_objects/.libs/libsciexternal_objects.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/slint/.libs/libscislint.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/coverage/.libs/libscicoverage.so -lxml2 -lz -llzma -licui18n -licuuc -licudata /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/mpi/.libs/libscimpi.so -lmpi /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/gui/.libs/libscigui-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/graphics/.libs/libscigraphics-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/graphic_export/.libs/libscigraphic_export-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/console/.libs/libsciconsole-minimal.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/action_binding/.libs/libsciaction_binding-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/jvm/.libs/libscijvm-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/xcos/.libs/libscixcos-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/graphic_objects/.libs/libscigraphic_objects-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/scinotes/.libs/libsciscinotes-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/ui_data/.libs/libsciui_data-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/history_browser/.libs/libscihistory_browser-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/commons/.libs/libscicommons-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/preferences/.libs/libscipreferences-cli.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/tclsci/.libs/libscitclsci-disable.so -lblas -llapack -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1 -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1/../../.. -lgfortran -lquadmath -lpthread -ldl -lcurses -lm -pthread -Wl,-rpath -Wl,/usr/lib/scilab echo "libstdc++ presence test skipped" libstdc++ presence test skipped ./bin/scilab-cli -ns -noatomsautoload -quit -f modules/functions/scripts/buildmacros/buildmacros.sce -- Build localization (.mo from .po) -- -- Building for en_US -- Creating ./locale/en_US/LC_MESSAGES/ -- Building for fr_FR -- Creating ./locale/fr_FR/LC_MESSAGES/ -- Building for zh_CN -- Creating ./locale/zh_CN/LC_MESSAGES/ -- Building for zh_TW -- Creating ./locale/zh_TW/LC_MESSAGES/ -- Building for ru_RU -- Creating ./locale/ru_RU/LC_MESSAGES/ -- Building for ca_ES -- Creating ./locale/ca_ES/LC_MESSAGES/ -- Building for de_DE -- Creating ./locale/de_DE/LC_MESSAGES/ -- Building for es_ES -- Creating ./locale/es_ES/LC_MESSAGES/ -- Building for pt_BR -- Creating ./locale/pt_BR/LC_MESSAGES/ -- Building for ja_JP -- Creating ./locale/ja_JP/LC_MESSAGES/ -- Building for it_IT -- Creating ./locale/it_IT/LC_MESSAGES/ -- Building for uk_UA -- Creating ./locale/uk_UA/LC_MESSAGES/ -- Building for pl_PL -- Creating ./locale/pl_PL/LC_MESSAGES/ -- Building for cs_CZ -- Creating ./locale/cs_CZ/LC_MESSAGES/ make[1]: Leaving directory '/tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0' /usr/lib/jvm/default/bin/javadoc -noindex -nohelp -nonavbar -notree \ -d ./modules/javasci/javadoc \ -sourcepath ./modules/javasci/src/java:./modules/types/src/java::./modules/localization/src/java \ org.scilab.modules.javasci org.scilab.modules.types Loading source files for package org.scilab.modules.javasci... Loading source files for package org.scilab.modules.types... Constructing Javadoc information... Creating destination directory: "./modules/javasci/javadoc/" Standard Doclet version 1.8.0_141 Building tree for all the packages and classes... Generating ./modules/javasci/javadoc/org/scilab/modules/javasci/Call_Scilab.html... Generating ./modules/javasci/javadoc/org/scilab/modules/javasci/JavasciException.html... Generating ./modules/javasci/javadoc/org/scilab/modules/javasci/JavasciException.AlreadyRunningException.html... Generating ./modules/javasci/javadoc/org/scilab/modules/javasci/JavasciException.InitializationException.html... Generating ./modules/javasci/javadoc/org/scilab/modules/javasci/JavasciException.ScilabErrorException.html... Generating ./modules/javasci/javadoc/org/scilab/modules/javasci/JavasciException.ScilabInternalException.html... Generating ./modules/javasci/javadoc/org/scilab/modules/javasci/JavasciException.UndefinedVariableException.html... 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Generating ./modules/javasci/javadoc/org/scilab/modules/types/package-summary.html... Generating ./modules/javasci/javadoc/constant-values.html... Generating ./modules/javasci/javadoc/serialized-form.html... Building index for all the packages and classes... Generating ./modules/javasci/javadoc/deprecated-list.html... Building index for all classes... Generating ./modules/javasci/javadoc/allclasses-frame.html... Generating ./modules/javasci/javadoc/allclasses-noframe.html... Generating ./modules/javasci/javadoc/index.html... Generating ./modules/javasci/javadoc/overview-summary.html... 70 warnings -- Building documentation (en_US) -- LANG=en_US.UTF-8 LC_ALL=C SCI_DISABLE_TK=1 SCI_JAVA_ENABLE_HEADLESS=1 _JAVA_OPTIONS='-Djava.awt.headless=true' ./bin/scilab-adv-cli -noatomsautoload -nb -l en_US -nouserstartup -e "try xmltojar([],[],'en_US');catch disp(lasterror()); exit(-1);end;exit(0);" Failed to execute SCI/modules/core/etc/core.start: load: /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/core/mac ros/lib is not a valid lib file.

Hello, I am not sure that this is the right place to report my problem, but I have been searching for so long that I am a bit desperate right now. After having built and installed the package, trying to add a module creates HDF5 errors. For example, when running the command atomsSysemUdpate in scilab-cli, the first errors come from HDF5 : HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0: #000: H5G.c line 553 in H5Gget_info(): invalid argument major: Invalid arguments to routine minor: Bad value HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0: #000: H5G.c line 301 in H5Gcreate2(): not a location major: Invalid arguments to routine minor: Inappropriate type #001: H5Gloc.c line 253 in H5G_loc(): invalid object ID major: Invalid arguments to routine minor: Bad value HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0: #000: H5A.c line 265 in H5Acreate2(): not a location major: Invalid arguments to routine minor: Inappropriate type #001: H5Gloc.c line 253 in H5G_loc(): invalid object ID major: Invalid arguments to routine minor: Bad value HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0: #000: H5D.c line 121 in H5Dcreate2(): not a location ID major: Invalid arguments to routine minor: Inappropriate type #001: H5Gloc.c line 253 in H5G_loc(): invalid object ID major: Invalid arguments to routine minor: Bad value HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0: #000: H5F.c line 749 in H5Fclose(): not a file ID major: Invalid arguments to routine minor: Inappropriate type I've been trying a lot of things, but no way to get rid of this error. Perhaps am I missing something. Any help would be sooooo welcome.

@petronny: Ok, I see the errors and I added the dep but I think it's more related to openmpi

Generating ./modules/javasci/javadoc/serialized-form.html... Building index for all the packages and classes... Generating ./modules/javasci/javadoc/deprecated-list.html... Building index for all classes... Generating ./modules/javasci/javadoc/allclasses-frame.html... Generating ./modules/javasci/javadoc/allclasses-noframe.html... Generating ./modules/javasci/javadoc/index.html... Generating ./modules/javasci/javadoc/overview-summary.html... 70 warnings -- Building documentation (en_US) -- LANG=en_US.UTF-8 LC_ALL=C SCI_DISABLE_TK=1 SCI_JAVA_ENABLE_HEADLESS=1 _JAVA_OPTIONS='-Djava.awt.headless=true' ./bin/scilab-adv-cli -noatomsautoload -nb -l en_US -nouserstartup -e "try xmltojar([],[],'en_US');catch disp(lasterror()); exit(-1);end;exit(0);" -------------------------------------------------------------------------- The value of the MCA parameter "plm_rsh_agent" was set to a path that could not be found: plm_rsh_agent: ssh : rsh Please either unset the parameter, or check that the path is correct -------------------------------------------------------------------------- [calil:26214] [[INVALID],INVALID] ORTE_ERROR_LOG: Unable to start a daemon on the local node in file ess_singleton_module.c at line 582 [calil:26214] [[INVALID],INVALID] ORTE_ERROR_LOG: Unable to start a daemon on the local node in file ess_singleton_module.c at line 166 -------------------------------------------------------------------------- It looks like orte_init failed for some reason; your parallel process is likely to abort. There are many reasons that a parallel process can fail during orte_init; some of which are due to configuration or environment problems. This failure appears to be an internal failure; here's some additional information (which may only be relevant to an Open MPI developer): orte_ess_init failed --> Returned value Unable to start a daemon on the local node (-127) instead of ORTE_SUCCESS -------------------------------------------------------------------------- -------------------------------------------------------------------------- It looks like MPI_INIT failed for some reason; your parallel process is likely to abort. There are many reasons that a parallel process can fail during MPI_INIT; some of which are due to configuration or environment problems. This failure appears to be an internal failure; here's some additional information (which may only be relevant to an Open MPI developer):

@petronny: could you provide more information about your issue because I didn't findd any reference to ssh or rsh in the source code?

Hi, openssh or inetutils is needed as a make dependency. The script is searching for ssh or rsh.