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Package Details: snakemake 8.27.1-1
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Git Clone URL: | https://aur.archlinux.org/snakemake.git (read-only, click to copy) |
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Package Base: | snakemake |
Description: | Python-based language and execution environment for GNU Make-like workflows |
Upstream URL: | https://snakemake.readthedocs.io |
Licenses: | MIT |
Submitter: | kyleam |
Maintainer: | mschu |
Last Packager: | mschu |
Votes: | 8 |
Popularity: | 0.000000 |
First Submitted: | 2014-06-28 04:18 (UTC) |
Last Updated: | 2025-01-11 19:42 (UTC) |
Dependencies (50)
- jupyter-nbformat
- python-appdirs
- python-conda-injectAUR
- python-configargparse (python-configargparse-gitAUR)
- python-connection_poolAUR
- python-datrie
- python-docutils
- python-dpathAUR
- python-gitpython
- python-humanfriendly
- python-immutablesAUR
- python-jinja
- python-jsonschema
- python-packaging
- python-psutil
- python-pulpAUR (python-pulp-gitAUR)
- python-requests
- python-reretryAUR
- python-smart_openAUR
- python-snakemake-interface-commonAUR
- python-snakemake-interface-executor-pluginsAUR
- python-snakemake-interface-report-pluginsAUR
- python-snakemake-interface-storage-pluginsAUR
- python-stopit
- python-tabulate (python-tabulate-gitAUR)
- python-throttlerAUR
- python-wrapt
- python-yaml (python-yaml-gitAUR)
- python-yteAUR
- python-build (make)
- python-installer (make)
- python-setuptools (make)
- python-wheel (make)
- python-biopythonAUR (optional) – For GenBank/NCBI Entrez support
- python-boto3 (optional) – For AWS support
- python-dropbox (optional) – For Dropbox support
- python-easywebdavAUR (optional) – For WebDAV support
- python-ftputilAUR (optional) – For FTP support
- python-moto (optional) – For AWS support
- python-pygments (optional) – For report generation
- python-pysftpAUR (optional) – For SFTP support
- python-xrootd (optional) – For XRootD support
- slacker (optional) – For messaging
Latest Comments
1 2 Next › Last »
flying-sheep commented on 2023-07-30 16:24 (UTC)
I’m no longer using snakemake, if anyone wants to take over, feel free!
luscinius commented on 2023-05-10 23:23 (UTC)
python-ratelimiter is one of the dependencies, and their upstream does not support python 3.11 yet.
user20159 commented on 2022-10-21 12:56 (UTC)
In 7.16.1, https://pypi.org/project/reretry/ which doesn't have an AUR package yet seems to be an added dependency.
luscinius commented on 2022-09-06 02:16 (UTC)
Same problem with 7.14.0-1, the package fails to build in a clean chroot, adding python-wheel to makedepends solves the problem.
luscinius commented on 2022-05-31 04:54 (UTC)
The package does not build in a clean chroot, python-wheel needs to be added to makedepends to resolve this.
mschu commented on 2021-06-03 09:51 (UTC)
I can confirm @berquist's issue, the package does not install via yay for me with the same error.
berquist commented on 2021-05-29 00:22 (UTC)
I'm not sure if this is a problem with my setup, but the commit for 6.3.0 (d6d18cfd8ab8) doesn't seem to be on a branch? It clones directly into a detached HEAD state.
op3 commented on 2019-10-15 20:18 (UTC)
python-psutil
is listed as an optional dependency, but the setup.py of the latest version requires it for installation.1 2 Next › Last »