pfam
|
31.0-1 |
0 |
0.00
|
The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs). |
anadon
|
2018-04-02 16:31 (UTC) |
ngs
|
2.10.0-2 |
2 |
0.00
|
A new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. |
orphan
|
2019-08-25 03:20 (UTC) |
neovim-lion-opt-git
|
56.75306ac-1 |
1 |
0.00
|
A simple alignment operator for (neo)vim. |
shanewstone
|
2020-04-30 01:19 (UTC) |
nanoget
|
1.19.3-1 |
0 |
0.00
|
Functions to extract useful metrics from Oxford Nanopore sequencing reads and alignments |
kbipinkumar
|
2023-09-20 00:01 (UTC) |
mgiza
|
3.0-1 |
0 |
0.00
|
Multithreaded version of Giza, a statistical machine translation toolkit used to train word alignment models |
panosk
|
2015-10-03 16:35 (UTC) |
mafft
|
7.526-1 |
14 |
0.00
|
Multiple alignment program for amino acid or nucleotide sequences. https://doi.org/10.1093/molbev/mst010 |
BioArchLinuxBot
|
2024-04-26 13:05 (UTC) |
m2m-aligner
|
1.2-2 |
3 |
0.00
|
Many-to-Many alignment model |
m01
|
2016-12-03 20:21 (UTC) |
locarna
|
1.9.2.2-1 |
2 |
0.00
|
Global and Local Alignment of RNAs |
RaumZeit
|
2019-06-23 16:00 (UTC) |
justify-git
|
r17.5ad543a-1 |
0 |
0.00
|
Simple text alignment tool that supports left/right/center/fill justify alignment |
xfnw
|
2022-04-05 00:32 (UTC) |
jalview
|
2.11.2.0-2 |
11 |
0.00
|
Bioinformatics Multiple Alignment Editor |
orphan
|
2022-03-25 07:22 (UTC) |
hisat2-git
|
2.2.1.r55.g5086938-1 |
0 |
0.00
|
A fast and sensitive alignment program for mapping sequencing reads |
Chocobo1
|
2023-04-10 19:08 (UTC) |
hisat2-bin
|
2.2.1-3 |
0 |
0.00
|
A fast and sensitive alignment program for mapping sequencing reads |
Chocobo1
|
2022-05-06 13:50 (UTC) |
hisat2
|
2.2.1-1 |
3 |
0.87
|
A fast and sensitive alignment program for mapping next-generation sequencing reads against genomes |
flying-sheep
|
2020-10-21 14:45 (UTC) |
gotohscan
|
2.0_alpha-1 |
0 |
0.00
|
Search short sequences in large database sequences by computing all semi-global alignments |
RaumZeit
|
2015-09-18 22:10 (UTC) |
gmap-gsnap
|
2019.03.15-1 |
3 |
0.00
|
A Genomic Mapping and Alignment Program for mRNA and EST Sequences, and Genomic Short-read Nucleotide Alignment Program |
orphan
|
2019-04-22 21:12 (UTC) |
giza-pp-git
|
r21.228a39b-1 |
0 |
0.00
|
A statistical machine translation toolkit used to train word alignment models |
panosk
|
2017-01-19 17:41 (UTC) |
gblocks
|
0.91b-7 |
1 |
0.00
|
A program written in ANSI C language that eliminates poorly aligned positions and divergent regions of an alignment of DNA or protein sequences. https://doi.org/10.1093/oxfordjournals.molbev.a026334 |
malacology
|
2024-01-18 12:01 (UTC) |
fasttree
|
2.1.11-1 |
3 |
0.00
|
Approximately-Maximum-Likelihood Trees for Large Alignments |
semi
|
2019-09-20 19:21 (UTC) |
fastani
|
1.34-1 |
0 |
0.00
|
Fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). |
kbipinkumar
|
2023-07-31 00:01 (UTC) |
edlib
|
1.2.7-4 |
0 |
0.00
|
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance |
qubidt
|
2023-06-20 15:32 (UTC) |
dialign
|
2.2.1-3 |
1 |
0.00
|
Multiple sequence alignment program |
boenki
|
2015-07-06 15:16 (UTC) |
clustalx
|
2.1-6 |
3 |
0.00
|
Multiple alignment of nucleic acid and protein sequences |
RaumZeit
|
2021-06-04 16:09 (UTC) |
clustalw
|
2.1-4 |
4 |
0.00
|
Clustal W multiple sequence alignment program, version 2.0 |
RaumZeit
|
2021-06-04 16:05 (UTC) |
clustal-omega
|
1.2.4-1 |
12 |
0.00
|
Protein sequence alignment program |
Rhinoceros
|
2017-01-19 12:07 (UTC) |
bowtie
|
1.3.1-1 |
8 |
0.00
|
Alignment tool for short nucleotide sequences against long templates |
a821
|
2022-10-28 15:22 (UTC) |
biodiff-bin
|
1.1.0-1 |
0 |
0.00
|
Hex diff viewer using alignment algorithms from biology |
icecamphor
|
2023-11-23 18:10 (UTC) |
bamrescue
|
0.3.0-1 |
0 |
0.00
|
Utility to check Binary Sequence Alignment / Map (BAM) files for corruption and repair them |
Arkanosis
|
2023-02-23 03:07 (UTC) |
abpoa
|
1.5.1-1 |
0 |
0.00
|
SIMD-based C library for fast partial order alignment. https://dx.doi.org/10.1093/bioinformatics/btaa963 |
kbipinkumar
|
2024-01-16 06:03 (UTC) |