78 packages found. Page 2 of 2.

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Name Version Votes Popularity? Description Maintainer Last Updated
pfam 31.0-1 0 0.00 The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs). anadon 2018-04-02 16:31 (UTC)
ngs 2.10.0-2 2 0.00 A new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. orphan 2019-08-25 03:20 (UTC)
neovim-lion-opt-git 56.75306ac-1 1 0.00 A simple alignment operator for (neo)vim. shanewstone 2020-04-30 01:19 (UTC)
nanoget 1.19.3-1 0 0.00 Functions to extract useful metrics from Oxford Nanopore sequencing reads and alignments kbipinkumar 2023-09-20 00:01 (UTC)
mgiza 3.0-1 0 0.00 Multithreaded version of Giza, a statistical machine translation toolkit used to train word alignment models panosk 2015-10-03 16:35 (UTC)
mafft 7.526-1 14 0.00 Multiple alignment program for amino acid or nucleotide sequences. https://doi.org/10.1093/molbev/mst010 BioArchLinuxBot 2024-04-26 13:05 (UTC)
m2m-aligner 1.2-2 3 0.00 Many-to-Many alignment model m01 2016-12-03 20:21 (UTC)
locarna 1.9.2.2-1 2 0.00 Global and Local Alignment of RNAs RaumZeit 2019-06-23 16:00 (UTC)
justify-git r17.5ad543a-1 0 0.00 Simple text alignment tool that supports left/right/center/fill justify alignment xfnw 2022-04-05 00:32 (UTC)
jalview 2.11.2.0-2 11 0.00 Bioinformatics Multiple Alignment Editor orphan 2022-03-25 07:22 (UTC)
hisat2-git 2.2.1.r55.g5086938-1 0 0.00 A fast and sensitive alignment program for mapping sequencing reads Chocobo1 2023-04-10 19:08 (UTC)
hisat2-bin 2.2.1-3 0 0.00 A fast and sensitive alignment program for mapping sequencing reads Chocobo1 2022-05-06 13:50 (UTC)
hisat2 2.2.1-1 3 0.87 A fast and sensitive alignment program for mapping next-generation sequencing reads against genomes flying-sheep 2020-10-21 14:45 (UTC)
gotohscan 2.0_alpha-1 0 0.00 Search short sequences in large database sequences by computing all semi-global alignments RaumZeit 2015-09-18 22:10 (UTC)
gmap-gsnap 2019.03.15-1 3 0.00 A Genomic Mapping and Alignment Program for mRNA and EST Sequences, and Genomic Short-read Nucleotide Alignment Program orphan 2019-04-22 21:12 (UTC)
giza-pp-git r21.228a39b-1 0 0.00 A statistical machine translation toolkit used to train word alignment models panosk 2017-01-19 17:41 (UTC)
gblocks 0.91b-7 1 0.00 A program written in ANSI C language that eliminates poorly aligned positions and divergent regions of an alignment of DNA or protein sequences. https://doi.org/10.1093/oxfordjournals.molbev.a026334 malacology 2024-01-18 12:01 (UTC)
fasttree 2.1.11-1 3 0.00 Approximately-Maximum-Likelihood Trees for Large Alignments semi 2019-09-20 19:21 (UTC)
fastani 1.34-1 0 0.00 Fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). kbipinkumar 2023-07-31 00:01 (UTC)
edlib 1.2.7-4 0 0.00 Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance qubidt 2023-06-20 15:32 (UTC)
dialign 2.2.1-3 1 0.00 Multiple sequence alignment program boenki 2015-07-06 15:16 (UTC)
clustalx 2.1-6 3 0.00 Multiple alignment of nucleic acid and protein sequences RaumZeit 2021-06-04 16:09 (UTC)
clustalw 2.1-4 4 0.00 Clustal W multiple sequence alignment program, version 2.0 RaumZeit 2021-06-04 16:05 (UTC)
clustal-omega 1.2.4-1 12 0.00 Protein sequence alignment program Rhinoceros 2017-01-19 12:07 (UTC)
bowtie 1.3.1-1 8 0.00 Alignment tool for short nucleotide sequences against long templates a821 2022-10-28 15:22 (UTC)
biodiff-bin 1.1.0-1 0 0.00 Hex diff viewer using alignment algorithms from biology icecamphor 2023-11-23 18:10 (UTC)
bamrescue 0.3.0-1 0 0.00 Utility to check Binary Sequence Alignment / Map (BAM) files for corruption and repair them Arkanosis 2023-02-23 03:07 (UTC)
abpoa 1.5.1-1 0 0.00 SIMD-based C library for fast partial order alignment. https://dx.doi.org/10.1093/bioinformatics/btaa963 kbipinkumar 2024-01-16 06:03 (UTC)

78 packages found. Page 2 of 2.

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