|
abpoa
|
1.5.1-1 |
0 |
0.00
|
SIMD-based C library for fast partial order alignment. https://dx.doi.org/10.1093/bioinformatics/btaa963 |
kbipinkumar
|
2024-01-16 06:03 (UTC) |
|
bamrescue
|
0.3.0-1 |
0 |
0.00
|
Utility to check Binary Sequence Alignment / Map (BAM) files for corruption and repair them |
Arkanosis
|
2023-02-23 03:07 (UTC) |
|
biodiff-bin
|
1.1.0-1 |
0 |
0.00
|
Hex diff viewer using alignment algorithms from biology |
icecamphor
|
2023-11-23 18:10 (UTC) |
|
bowtie
|
1.3.1-1 |
8 |
0.00
|
Alignment tool for short nucleotide sequences against long templates |
a821
|
2022-10-28 15:22 (UTC) |
|
clustal-omega
|
1.2.4-1 |
12 |
0.00
|
Protein sequence alignment program |
Rhinoceros
|
2017-01-19 12:07 (UTC) |
|
clustalw
|
2.1-4 |
4 |
0.00
|
Clustal W multiple sequence alignment program, version 2.0 |
RaumZeit
|
2021-06-04 16:05 (UTC) |
|
clustalx
|
2.1-6 |
3 |
0.00
|
Multiple alignment of nucleic acid and protein sequences |
RaumZeit
|
2021-06-04 16:09 (UTC) |
|
dialign
|
2.2.1-3 |
1 |
0.00
|
Multiple sequence alignment program |
boenki
|
2015-07-06 15:16 (UTC) |
|
edlib
|
1.2.7-4 |
0 |
0.00
|
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance |
qubidt
|
2023-06-20 15:32 (UTC) |
|
fastani
|
1.34-1 |
0 |
0.00
|
Fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). |
kbipinkumar
|
2023-07-31 00:01 (UTC) |
|
fasttree
|
2.1.11-1 |
3 |
0.00
|
Approximately-Maximum-Likelihood Trees for Large Alignments |
semi
|
2019-09-20 19:21 (UTC) |
|
gblocks
|
0.91b-7 |
1 |
0.00
|
A program written in ANSI C language that eliminates poorly aligned positions and divergent regions of an alignment of DNA or protein sequences. https://doi.org/10.1093/oxfordjournals.molbev.a026334 |
malacology
|
2024-01-18 12:01 (UTC) |
|
giza-pp-git
|
r21.228a39b-1 |
0 |
0.00
|
A statistical machine translation toolkit used to train word alignment models |
panosk
|
2017-01-19 17:41 (UTC) |
|
gmap-gsnap
|
2019.03.15-1 |
3 |
0.00
|
A Genomic Mapping and Alignment Program for mRNA and EST Sequences, and Genomic Short-read Nucleotide Alignment Program |
orphan
|
2019-04-22 21:12 (UTC) |
|
gotohscan
|
2.0_alpha-1 |
0 |
0.00
|
Search short sequences in large database sequences by computing all semi-global alignments |
RaumZeit
|
2015-09-18 22:10 (UTC) |
|
hisat2-bin
|
2.2.1-3 |
0 |
0.00
|
A fast and sensitive alignment program for mapping sequencing reads |
Chocobo1
|
2022-05-06 13:50 (UTC) |
|
hisat2-git
|
2.2.1.r55.g5086938-1 |
0 |
0.00
|
A fast and sensitive alignment program for mapping sequencing reads |
Chocobo1
|
2023-04-10 19:08 (UTC) |
|
jalview
|
2.11.2.0-2 |
11 |
0.00
|
Bioinformatics Multiple Alignment Editor |
orphan
|
2022-03-25 07:22 (UTC) |
|
justify-git
|
r17.5ad543a-1 |
0 |
0.00
|
Simple text alignment tool that supports left/right/center/fill justify alignment |
xfnw
|
2022-04-05 00:32 (UTC) |
|
locarna
|
1.9.2.2-1 |
2 |
0.00
|
Global and Local Alignment of RNAs |
RaumZeit
|
2019-06-23 16:00 (UTC) |
|
m2m-aligner
|
1.2-2 |
3 |
0.00
|
Many-to-Many alignment model |
m01
|
2016-12-03 20:21 (UTC) |
|
mgiza
|
3.0-1 |
0 |
0.00
|
Multithreaded version of Giza, a statistical machine translation toolkit used to train word alignment models |
panosk
|
2015-10-03 16:35 (UTC) |
|
nanoget
|
1.19.3-1 |
0 |
0.00
|
Functions to extract useful metrics from Oxford Nanopore sequencing reads and alignments |
kbipinkumar
|
2023-09-20 00:01 (UTC) |
|
neovim-lion-opt-git
|
56.75306ac-1 |
1 |
0.00
|
A simple alignment operator for (neo)vim. |
shanewstone
|
2020-04-30 01:19 (UTC) |
|
ngs
|
2.10.0-2 |
2 |
0.00
|
A new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. |
orphan
|
2019-08-25 03:20 (UTC) |
|
pfam
|
31.0-1 |
0 |
0.00
|
The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs). |
anadon
|
2018-04-02 16:31 (UTC) |
|
phyde
|
0.9971-2 |
0 |
0.00
|
a system-independent editor for DNA and amino acid sequence alignments, designed to assist anybody interested in phylogenetic or other comparative analyses of sequence data |
malacology
|
2022-08-28 10:34 (UTC) |
|
python-astroalign
|
2.3.1-00 |
0 |
0.00
|
Astrometric Alignment of Images |
Arcturus
|
2021-01-11 08:36 (UTC) |
|
python-pyfamsa
|
0.3.2-1 |
0 |
0.00
|
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments |
althonos
|
2024-01-27 14:11 (UTC) |
|
python-pyswrd
|
0.1.1-1 |
0 |
0.00
|
Cython bindings and Python interface to SWORD, a method for query-database alignment. |
althonos
|
2024-02-28 10:41 (UTC) |
|
python-pytrimal
|
0.7.0-1 |
0 |
0.00
|
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. |
althonos
|
2023-07-21 19:19 (UTC) |
|
python-tweakwcs
|
0.8.7-1 |
0 |
0.00
|
A package for correcting alignment errors in WCS objects |
Universebenzene
|
2024-04-01 07:52 (UTC) |
|
r-balcony
|
0.2.10-4 |
0 |
0.00
|
Better ALignment CONsensus analYsis |
BioArchLinuxBot
|
2023-04-22 23:02 (UTC) |
|
r-dialignr
|
2.12.0-1 |
0 |
0.00
|
Dynamic Programming Based Alignment of MS2 Chromatograms |
BioArchLinuxBot
|
2024-05-01 22:44 (UTC) |
|
r-egg
|
0.4.5-7 |
0 |
0.00
|
Extensions for 'ggplot2': Custom Geom, Custom Themes, Plot Alignment, Labelled Panels, Symmetric Scales, and Fixed Panel Size |
BioArchLinuxBot
|
2022-10-18 12:52 (UTC) |
|
r-funchip
|
1.28.0-1 |
0 |
0.00
|
Clustering and Alignment of ChIP-Seq peaks based on their shapes |
BioArchLinuxBot
|
2023-10-27 07:37 (UTC) |
|
r-genomicalignments
|
1.38.2-1 |
0 |
0.00
|
Representation and manipulation of short genomic alignments |
greyltc
|
2024-04-08 14:55 (UTC) |
|
r-ggmsa
|
1.10.0-1 |
0 |
0.00
|
Plot Multiple Sequence Alignment using 'ggplot2' |
BioArchLinuxBot
|
2024-05-02 01:55 (UTC) |
|
r-girafe
|
1.56.0-1 |
0 |
0.00
|
Genome Intervals and Read Alignments for Functional Exploration |
BioArchLinuxBot
|
2024-05-03 01:20 (UTC) |
|
r-graphalignment
|
1.68.0-1 |
0 |
0.00
|
GraphAlignment |
BioArchLinuxBot
|
2024-05-02 03:53 (UTC) |
|
r-h5vc
|
2.38.0-1 |
0 |
0.00
|
Managing alignment tallies using a hdf5 backend |
BioArchLinuxBot
|
2024-05-02 00:42 (UTC) |
|
r-lowmaca
|
1.28.0-3 |
0 |
0.00
|
Low frequency Mutation Analysis via Consensus Alignment |
BioArchLinuxBot
|
2024-02-15 18:05 (UTC) |
|
r-msa
|
1.36.0-1 |
0 |
0.00
|
Multiple Sequence Alignment |
BioArchLinuxBot
|
2024-05-02 00:12 (UTC) |
|
r-msar
|
0.6.0-2 |
0 |
0.00
|
Multiple Sequence Alignment for R Shiny |
BioArchLinuxBot
|
2022-06-06 08:17 (UTC) |
|
r-muscle
|
3.46.0-1 |
0 |
0.00
|
Multiple Sequence Alignment with MUSCLE |
BioArchLinuxBot
|
2024-05-02 00:21 (UTC) |
|
r-ncgtw
|
1.18.0-1 |
0 |
0.00
|
Alignment of LC-MS Profiles by Neighbor-wise Compound-specific Graphical Time Warping with Misalignment Detection |
BioArchLinuxBot
|
2024-05-03 13:38 (UTC) |
|
r-odseq
|
1.32.0-1 |
0 |
0.00
|
Outlier detection in multiple sequence alignments |
BioArchLinuxBot
|
2024-05-02 01:53 (UTC) |
|
r-ompbam
|
1.8.0-1 |
0 |
0.00
|
C++ Library for OpenMP-based multi-threaded sequential profiling of Binary Alignment Map (BAM) files |
pekkarr
|
2024-05-02 05:08 (UTC) |
|
r-pwalign
|
1.0.0-1 |
0 |
0.00
|
Perform pairwise sequence alignments |
pekkarr
|
2024-05-02 11:44 (UTC) |
|
r-roar
|
1.40.0-1 |
0 |
0.00
|
Identify differential APA usage from RNA-seq alignments |
BioArchLinuxBot
|
2024-05-03 00:55 (UTC) |