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bustools
|
0.43.2-1 |
0 |
0.00
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Program for manipulating BUS files for single cell RNA-Seq datasets. doi:10.1038/s41587-021-00870-2 |
kbipinkumar
|
2024-01-04 12:09 (UTC) |
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cufflinks
|
2.2.2.20190706.162801-2 |
2 |
0.00
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Transcriptome assembly and differential expression analysis for RNA-Seq. |
malacology
|
2023-06-01 21:03 (UTC) |
|
cufflinks-bin
|
2.2.1-1 |
2 |
0.00
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Transcriptome assembly and differential expression analysis for RNA-Seq. |
vejnar
|
2022-08-03 12:49 (UTC) |
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cufflinks-git
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v2.2.1.r83.gb4fa050-1 |
0 |
0.00
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Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples.. |
greyltc
|
2019-05-25 20:27 (UTC) |
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kallisto
|
0.48.0-1 |
4 |
0.00
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Quantify abundances of transcripts from RNA-Seq data |
flying-sheep
|
2022-01-25 09:04 (UTC) |
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python-loompy
|
3.0.7-2 |
0 |
0.00
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Python implementation of the Loom file format for single-cell RNA-seq data |
flying-sheep
|
2022-09-16 15:15 (UTC) |
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r-absseq
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1.58.0-1 |
0 |
0.00
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ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences |
BioArchLinuxBot
|
2024-05-01 18:32 (UTC) |
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r-adverscarial
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1.2.0-1 |
0 |
0.00
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generate and analyze the vulnerability of scRNA-seq classifiers to adversarial attacks |
pekkarr
|
2024-05-02 13:16 (UTC) |
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r-aggregatebiovar
|
1.14.0-1 |
0 |
0.00
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Differential Gene Expression Analysis for Multi-subject scRNA-seq |
BioArchLinuxBot
|
2024-05-02 21:29 (UTC) |
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r-airway
|
1.24.0-1 |
0 |
0.00
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RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells, by Himes et al PLoS One 2014 |
BioArchLinuxBot
|
2024-05-03 07:33 (UTC) |
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r-apalyzer
|
1.18.0-1 |
0 |
0.00
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A toolkit for APA analysis using RNA-seq data |
BioArchLinuxBot
|
2024-05-03 04:48 (UTC) |
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r-aspli
|
2.14.0-1 |
0 |
0.00
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Analysis of Alternative Splicing Using RNA-Seq |
BioArchLinuxBot
|
2024-05-07 12:16 (UTC) |
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r-aucell
|
1.26.0-1 |
0 |
0.00
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AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures) |
BioArchLinuxBot
|
2024-05-03 12:21 (UTC) |
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r-bambu
|
3.6.0-1 |
0 |
0.00
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Reference-guided isoform reconstruction and quantification for long read RNA-Seq data |
BioArchLinuxBot
|
2024-05-03 03:18 (UTC) |
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r-bgeecall
|
1.18.1-1 |
0 |
0.00
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Automatic RNA-Seq present/absent gene expression calls generation |
BioArchLinuxBot
|
2023-11-02 00:35 (UTC) |
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r-busseq
|
1.10.0-1 |
0 |
0.00
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Batch Effect Correction with Unknow Subtypes for scRNA-seq data |
BioArchLinuxBot
|
2024-05-02 21:34 (UTC) |
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r-caen
|
1.12.0-1 |
0 |
0.00
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Category encoding method for selecting feature genes for the classification of single-cell RNA-seq |
BioArchLinuxBot
|
2024-05-02 19:31 (UTC) |
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r-ccimpute
|
1.6.0-1 |
0 |
0.00
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an accurate and scalable consensus clustering based approach to impute dropout events in the single-cell RNA-seq data |
pekkarr
|
2024-05-02 05:22 (UTC) |
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r-cellity
|
1.32.0-1 |
0 |
0.00
|
Quality Control for Single-Cell RNA-seq Data |
BioArchLinuxBot
|
2024-05-02 23:26 (UTC) |
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r-celltree
|
1.27.0-4 |
0 |
0.00
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Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure |
BioArchLinuxBot
|
2023-04-29 05:11 (UTC) |
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r-chetah
|
1.20.0-1 |
0 |
0.00
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Fast and accurate scRNA-seq cell type identification |
BioArchLinuxBot
|
2024-05-02 21:54 (UTC) |
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r-clustifyr
|
1.16.0-1 |
0 |
0.00
|
Classifier for Single-cell RNA-seq Using Cell Clusters |
BioArchLinuxBot
|
2024-05-08 18:15 (UTC) |
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r-compartmap
|
1.20.0-1 |
0 |
0.00
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Higher-order chromatin domain inference in single cells from scRNA-seq and scATAC-seq |
BioArchLinuxBot
|
2024-04-13 18:04 (UTC) |
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r-conclus
|
1.5.0-4 |
0 |
0.00
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ScRNA-seq Workflow CONCLUS - From CONsensus CLUSters To A Meaningful CONCLUSion |
BioArchLinuxBot
|
2023-04-29 07:00 (UTC) |
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r-consensusde
|
1.22.0-1 |
0 |
0.00
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RNA-seq analysis using multiple algorithms |
BioArchLinuxBot
|
2024-05-03 05:29 (UTC) |
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r-countclust
|
1.23.1-4 |
0 |
0.00
|
Clustering and Visualizing RNA-Seq Expression Data using Grade of Membership Models |
BioArchLinuxBot
|
2022-11-04 06:07 (UTC) |
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r-customprodb
|
1.44.0-1 |
0 |
0.00
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Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search |
BioArchLinuxBot
|
2024-05-07 12:08 (UTC) |
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r-damirseq
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2.16.0-1 |
0 |
0.00
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Data Mining for RNA-seq data: normalization, feature selection and classification |
BioArchLinuxBot
|
2024-05-03 13:54 (UTC) |
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r-dasper
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1.9.0-3 |
0 |
0.00
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Detecting abberant splicing events from RNA-sequencing data |
BioArchLinuxBot
|
2024-04-27 20:34 (UTC) |
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r-dearseq
|
1.16.0-1 |
0 |
0.00
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Differential Expression Analysis for RNA-seq data through a robust variance component test |
BioArchLinuxBot
|
2024-05-01 20:37 (UTC) |
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r-deconrnaseq
|
1.46.0-1 |
0 |
0.00
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Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data |
BioArchLinuxBot
|
2024-05-01 22:46 (UTC) |
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r-degnorm
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1.14.0-1 |
0 |
0.00
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degradation normalization for RNA-seq data |
BioArchLinuxBot
|
2024-05-08 18:08 (UTC) |
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r-degseq
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1.58.0-1 |
0 |
0.00
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Identify Differentially Expressed Genes from RNA-seq data |
BioArchLinuxBot
|
2024-05-01 23:24 (UTC) |
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r-demuxmix
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1.6.0-1 |
0 |
0.00
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Demultiplexing oligo-barcoded scRNA-seq data using regression mixture models |
pekkarr
|
2024-05-02 04:53 (UTC) |
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r-derfinder
|
1.38.0-1 |
0 |
0.00
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Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach |
BioArchLinuxBot
|
2024-05-03 08:18 (UTC) |
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r-desingle
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1.24.0-1 |
0 |
0.00
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DEsingle for detecting three types of differential expression in single-cell RNA-seq data |
BioArchLinuxBot
|
2024-05-01 19:48 (UTC) |
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r-desubs
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1.30.0-1 |
0 |
0.00
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DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments |
BioArchLinuxBot
|
2024-05-02 22:13 (UTC) |
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r-dexseq
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1.50.0-1 |
0 |
0.00
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Inference of differential exon usage in RNA-Seq |
BioArchLinuxBot
|
2024-05-03 13:01 (UTC) |
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r-differentialregulation
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2.2.0-1 |
0 |
0.00
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Differentially regulated genes from scRNA-seq data |
pekkarr
|
2024-05-02 21:45 (UTC) |
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r-drimpute
|
1.0-4 |
0 |
0.00
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Imputing Dropout Events in Single-Cell RNA-Sequencing Data |
BioArchLinuxBot
|
2022-06-06 00:34 (UTC) |
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r-drimseq
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1.32.0-1 |
0 |
0.00
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Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq |
BioArchLinuxBot
|
2024-05-01 22:25 (UTC) |
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r-dune
|
1.16.0-1 |
0 |
0.00
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Improving replicability in single-cell RNA-Seq cell type discovery |
BioArchLinuxBot
|
2024-05-02 19:38 (UTC) |
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r-dupradar
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1.34.0-1 |
0 |
0.00
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Assessment of duplication rates in RNA-Seq datasets |
BioArchLinuxBot
|
2024-05-02 05:14 (UTC) |
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r-easier
|
1.10.0-1 |
0 |
0.00
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Estimate Systems Immune Response from RNA-seq data |
BioArchLinuxBot
|
2024-05-03 18:53 (UTC) |
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r-easycelltype
|
1.6.0-1 |
0 |
0.00
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Annotate cell types for scRNA-seq data |
pekkarr
|
2024-05-06 18:06 (UTC) |
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r-easyrnaseq
|
2.38.0-1 |
0 |
0.00
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Count summarization and normalization for RNA-Seq data |
BioArchLinuxBot
|
2023-10-27 09:50 (UTC) |
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r-ebseq
|
2.2.0-1 |
0 |
0.00
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An R package for gene and isoform differential expression analysis of RNA-seq data |
BioArchLinuxBot
|
2024-05-02 04:46 (UTC) |
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r-ebseqhmm
|
1.35.0-1 |
0 |
0.00
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Bayesian analysis for identifying gene or isoform expression changes in ordered RNA-seq experiments |
BioArchLinuxBot
|
2023-10-26 06:46 (UTC) |
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r-edaseq
|
2.38.0-1 |
0 |
0.00
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Exploratory Data Analysis and Normalization for RNA-Seq |
BioArchLinuxBot
|
2024-05-03 02:23 (UTC) |
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r-erssa
|
1.22.0-1 |
0 |
0.00
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Empirical RNA-seq Sample Size Analysis |
BioArchLinuxBot
|
2024-05-02 22:21 (UTC) |