|
adapterremoval
|
2.3.3-2 |
0 |
0.00
|
Remove remnant adapter sequences from High-Throughput Sequencing (HTS) data and trim low quality bases from the 3 prime end |
kbipinkumar
|
2023-04-02 06:02 (UTC) |
|
alevin-fry
|
0.9.0-1 |
0 |
0.00
|
A suite of tools for the rapid, accurate and memory-frugal processing single-cell and single-nucleus sequencing data |
kbipinkumar
|
2024-03-09 00:03 (UTC) |
|
alignace
|
1.0-6 |
0 |
0.00
|
Program that finds sequence elements conserved in a set of DNA sequences |
allencch
|
2017-06-22 17:25 (UTC) |
|
amrfinderplus
|
3.12.8-2 |
0 |
0.00
|
Identify Antimicrobial resistance genes in assembled bacterial nucleotide and protein sequence. https://doi.org/10.1038/s41598-021-91456-0 |
kbipinkumar
|
2024-03-03 18:02 (UTC) |
|
any2fasta
|
0.4.2-1 |
0 |
0.00
|
convert various sequence formats to FASTA |
kbipinkumar
|
2023-05-08 13:57 (UTC) |
|
apngasm-bin
|
2.91-1 |
0 |
0.00
|
Creates APNG animation from PNG/TGA image sequence |
orphan
|
2020-07-25 07:47 (UTC) |
|
ath
|
1.0.0-1 |
0 |
0.00
|
command line tool for converting text containing ANSI escape sequences into HTML |
maltejur
|
2022-07-19 15:29 (UTC) |
|
b-step-git
|
r80.3e7d24f-2 |
0 |
0.00
|
The MonoPlugs b-step sequencer |
apoorv569
|
2024-02-26 05:20 (UTC) |
|
bamrescue
|
0.3.0-1 |
0 |
0.00
|
Utility to check Binary Sequence Alignment / Map (BAM) files for corruption and repair them |
Arkanosis
|
2023-02-23 03:07 (UTC) |
|
bcl2fastq-bin
|
2.20.0.422-2 |
0 |
0.00
|
Demultiplexes data and converts BCL files generated by Illumina sequencers to FASTQ for downstream analysis |
balwierz
|
2018-03-16 00:51 (UTC) |
|
bdelta-git
|
1:0.3.1.post2+g4782c58_20160919.fefefilesize-1 |
0 |
0.00
|
A tool to create diffs of binary files. A sophisticated sequence matching library bundled with a delta creator and patch tool. |
dreieck
|
2023-10-31 16:31 (UTC) |
|
beads
|
1.1-3 |
0 |
0.00
|
Bias Elimination Algorithm for Deep Sequencing. |
orphan
|
2023-01-02 17:44 (UTC) |
|
beagle-lib-all
|
4.0.1-1 |
0 |
0.00
|
general purpose library for evaluating the likelihood of sequence evolution on trees (with cuda and opencl) |
malacology
|
2024-01-17 06:02 (UTC) |
|
beagle-lib-cuda
|
4.0.1-1 |
0 |
0.00
|
general purpose library for evaluating the likelihood of sequence evolution on trees (with cuda) |
malacology
|
2024-01-17 06:05 (UTC) |
|
beagle-lib-opencl
|
4.0.1-1 |
0 |
0.00
|
general purpose library for evaluating the likelihood of sequence evolution on trees (with opencl) |
malacology
|
2023-10-13 18:05 (UTC) |
|
big-yotta
|
5.3-1 |
0 |
0.00
|
Sequencing.com utility for uploading large genetic data files |
alex.henrie
|
2021-03-29 02:16 (UTC) |
|
bionj
|
1997-1 |
0 |
0.00
|
an improved version of the NJ algorithm based on a simple model of sequence data |
malacology
|
2022-06-01 14:03 (UTC) |
|
bioprospector
|
2004-3 |
0 |
0.00
|
A DNA seqence motif finding programs |
allencch
|
2017-03-17 14:28 (UTC) |
|
bjumblr.lv2-git
|
1.6.8.r0.geeafe2d-1 |
0 |
0.00
|
A pattern-controlled audio stream re-sequencer LV2 plugin (git version) |
milkii
|
2024-04-26 17:44 (UTC) |
|
boops.lv2-git
|
1.2.4.r0.gbdb4de4-1 |
0 |
0.00
|
A glitch effect sequencer LV2 plugin (git version) |
SpotlightKid
|
2021-01-18 15:30 (UTC) |
|
bowtie2-bin
|
2.5.4-1 |
0 |
0.00
|
Tool for aligning sequencing reads to long reference sequences |
Chocobo1
|
2024-05-17 04:14 (UTC) |
|
bowtie2-git
|
2.5.3.r0.ga43fa6f-1 |
0 |
0.00
|
Tool for aligning sequencing reads to long reference sequences |
a821
|
2024-03-21 09:27 (UTC) |
|
bsequencer-git
|
1.8.0.r0.g8f96f92-1 |
0 |
0.00
|
Multi channel MIDI step sequencer LV2 plugin (git version) |
milkii
|
2020-09-14 21:01 (UTC) |
|
bslizr-git
|
1.2.8.r0.gf988a45-1 |
0 |
0.00
|
Sequenced audio slicing effect LV2 plugin (git version) |
milkii
|
2020-08-24 23:28 (UTC) |
|
bustools
|
0.43.2-1 |
0 |
0.00
|
Program for manipulating BUS files for single cell RNA-Seq datasets. doi:10.1038/s41587-021-00870-2 |
kbipinkumar
|
2024-01-04 12:09 (UTC) |
|
cacophony
|
0.1.2-1 |
0 |
0.00
|
A minimalist and ergonomic MIDI sequencer |
grawlinson
|
2023-11-07 00:36 (UTC) |
|
canu
|
2.2-1 |
0 |
0.00
|
A fork of the Celera Assembler designed for high-noise single-molecule sequencing |
Chocobo1
|
2021-08-27 10:41 (UTC) |
|
canu-bin
|
2.2-2 |
0 |
0.00
|
A fork of the Celera Assembler designed for high-noise single-molecule sequencing |
Chocobo1
|
2022-05-06 13:47 (UTC) |
|
canu-git
|
2.2.r89.g769108f4b-1 |
0 |
0.00
|
A fork of the Celera Assembler designed for high-noise single-molecule sequencing |
Chocobo1
|
2023-04-10 08:24 (UTC) |
|
cdd
|
2018.april.2-1 |
0 |
0.00
|
The Conserved Domain Database is a resource for the annotation of functional units in proteins. Its collection of domain models includes a set curated by NCBI, which utilizes 3D structure to provide insights into sequence/structure/function relationships. |
anadon
|
2018-04-04 20:26 (UTC) |
|
chicken-lazy-seq
|
2-1 |
0 |
0.00
|
Clojure-like lazy sequences for Chicken Scheme |
Junker
|
2024-01-03 02:26 (UTC) |
|
chicken-srfi-127
|
1.3-1 |
0 |
0.00
|
SRFI-127: Lazy Sequences for Chicken Scheme |
Junker
|
2024-01-02 13:49 (UTC) |
|
chopper
|
0.8.0-1 |
0 |
0.00
|
Rust implementation of NanoFilt+NanoLyse intended for long read sequencing |
kbipinkumar
|
2024-04-20 00:02 (UTC) |
|
cl-split-sequence
|
2.0.1-1 |
0 |
0.00
|
Splits a sequence into a list of subsequences |
grawlinson
|
2022-05-14 22:03 (UTC) |
|
comet-ms-bin
|
2024.01.0-3 |
0 |
0.00
|
Comet: an open source tandem mass spectrometry (MS/MS) sequence database search tool |
levitsky
|
2024-05-08 21:35 (UTC) |
|
crfpp-git
|
1.0-1 |
0 |
0.00
|
CRF++ is a simple, customizable, and open source implementation of Conditional Random Fields (CRFs) for segmenting/labeling sequential data. |
MarsSeed
|
2022-03-30 13:38 (UTC) |
|
cufflinks-git
|
v2.2.1.r83.gb4fa050-1 |
0 |
0.00
|
Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples.. |
greyltc
|
2019-05-25 20:27 (UTC) |
|
cutadapt
|
4.8-1 |
0 |
0.00
|
Remove adapter sequences from high-throughput sequencing reads. doi:10.14806/ej.17.1.200 |
kbipinkumar
|
2024-04-12 18:21 (UTC) |
|
cutepeaks
|
0.2.3-1 |
0 |
0.00
|
A simple viewer for Sanger sequencing files |
Stunts
|
2022-02-08 01:37 (UTC) |
|
dafs-git
|
r108.e9cc15c-1 |
0 |
0.00
|
dual decomposition for aligning and folding RNA sequences simultaneously |
tzok
|
2024-03-21 13:57 (UTC) |
|
diamond-aligner-git
|
0.9.27.r1.g58ee82e-1 |
0 |
0.00
|
Accelerated BLAST compatible local sequence aligner |
orphan
|
2019-11-04 12:32 (UTC) |
|
dloopdetector-free
|
1.1-1 |
0 |
0.00
|
Fast loop detector for sequences of monocular images. No SURF support |
nooblercoobler
|
2018-03-20 18:47 (UTC) |
|
dnastar7activated
|
7.1.0-1 |
0 |
0.00
|
leader in the field of bioinformatics software, including SeqMan Editseq GeneQuest Megalign PrimerSelect Protean SeqBuilder |
malacology
|
2021-05-13 10:00 (UTC) |
|
dynknock
|
1.1.0-2 |
0 |
0.00
|
Port knocker using a periodically changing sequence |
CoolandonRS
|
2023-11-02 21:02 (UTC) |
|
dynknockd
|
1.1.0-4 |
0 |
0.00
|
Port knocking server using a periodicaly changing sequence |
CoolandonRS
|
2023-11-02 20:58 (UTC) |
|
edlib
|
1.2.7-5 |
0 |
0.00
|
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance |
qubidt
|
2024-05-06 14:57 (UTC) |
|
emacs-xterm-color
|
2.0-1 |
0 |
0.00
|
Emacs ANSI control sequence to text-property translator |
orphan
|
2020-05-11 08:44 (UTC) |
|
ent-git
|
r3.388d2cc-1 |
0 |
0.00
|
Utility for testing random and pseudorandom sequences |
cdison
|
2023-11-12 06:20 (UTC) |
|
estscan
|
3.0.3-2 |
0 |
0.00
|
ORF-independent detector of coding DNA sequences |
kbipinkumar
|
2023-04-15 18:01 (UTC) |
|
expressionmatrix2-git
|
0.4-3 |
0 |
0.00
|
Software for exploration of gene expression data from single-cell RNA sequencing. |
iosonofabio
|
2018-03-01 18:25 (UTC) |