r-uncoverapplib
|
1.14.0-1 |
0 |
0.00
|
Interactive graphical application for clinical assessment of sequence coverage at the base-pair level |
BioArchLinuxBot
|
2024-05-03 12:47 (UTC) |
r-vulcan
|
1.26.0-1 |
0 |
0.00
|
VirtUaL ChIP-Seq data Analysis using Networks |
BioArchLinuxBot
|
2024-05-03 12:35 (UTC) |
r-guideseq
|
1.34.0-1 |
0 |
0.00
|
GUIDE-seq analysis pipeline |
BioArchLinuxBot
|
2024-05-03 12:32 (UTC) |
r-redseq
|
1.50.0-1 |
0 |
0.00
|
Analysis of high-throughput sequencing data processed by restriction enzyme digestion |
BioArchLinuxBot
|
2024-05-03 12:31 (UTC) |
r-biseq
|
1.44.0-1 |
0 |
0.00
|
Processing and analyzing bisulfite sequencing data |
BioArchLinuxBot
|
2024-05-03 12:30 (UTC) |
r-methylseekr
|
1.44.0-1 |
0 |
0.00
|
Segmentation of Bis-seq data |
BioArchLinuxBot
|
2024-05-03 12:29 (UTC) |
r-slalom
|
1.26.0-1 |
0 |
0.00
|
Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data |
BioArchLinuxBot
|
2024-05-03 12:22 (UTC) |
r-aucell
|
1.26.0-1 |
0 |
0.00
|
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures) |
BioArchLinuxBot
|
2024-05-03 12:21 (UTC) |
r-mgfr
|
1.30.0-1 |
0 |
0.00
|
Marker Gene Finder in RNA-seq data |
BioArchLinuxBot
|
2024-05-03 12:09 (UTC) |
r-chippeakanno
|
3.38.0-1 |
0 |
0.00
|
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments, or any experiments that result in large number of genomic interval data |
BioArchLinuxBot
|
2024-05-03 12:06 (UTC) |
jagged-alliance-deadly-games-gog
|
1.13-3 |
0 |
0.00
|
A turn-based tactics game developed as a sequel of Jagged Alliance and features new missions and a multiplayer mode. |
nickelc
|
2024-05-03 09:45 (UTC) |
r-chipqc
|
1.40.0-1 |
0 |
0.00
|
Quality metrics for ChIPseq data |
BioArchLinuxBot
|
2024-05-03 09:33 (UTC) |
r-regionreport
|
1.38.0-1 |
0 |
0.00
|
Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results |
BioArchLinuxBot
|
2024-05-03 09:23 (UTC) |
r-diffbind
|
3.14.0-1 |
0 |
0.00
|
Differential Binding Analysis of ChIP-Seq Peak Data |
BioArchLinuxBot
|
2024-05-03 09:19 (UTC) |
r-spsimseq
|
1.14.0-1 |
0 |
0.00
|
Semi-parametric simulation tool for bulk and single-cell RNA sequencing data |
BioArchLinuxBot
|
2024-05-03 08:47 (UTC) |
r-srnadiff
|
1.24.0-1 |
0 |
0.00
|
Finding differentially expressed unannotated genomic regions from RNA-seq data |
BioArchLinuxBot
|
2024-05-03 08:36 (UTC) |
r-tradeseq
|
1.18.0-1 |
0 |
0.00
|
trajectory-based differential expression analysis for sequencing data |
BioArchLinuxBot
|
2024-05-03 08:30 (UTC) |
r-derfinder
|
1.38.0-1 |
0 |
0.00
|
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach |
BioArchLinuxBot
|
2024-05-03 08:18 (UTC) |
r-splicinggraphs
|
1.44.0-1 |
0 |
0.00
|
Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them |
BioArchLinuxBot
|
2024-05-03 08:14 (UTC) |
r-titancna
|
1.42.0-1 |
0 |
0.00
|
Subclonal copy number and LOH prediction from whole genome sequencing of tumours |
BioArchLinuxBot
|
2024-05-03 08:09 (UTC) |
r-zellkonverter
|
1.14.0-1 |
0 |
0.00
|
Conversion Between scRNA-seq Objects |
BioArchLinuxBot
|
2024-05-03 08:03 (UTC) |
r-tapseq
|
1.16.0-1 |
0 |
0.00
|
Targeted scRNA-seq primer design for TAP-seq |
BioArchLinuxBot
|
2024-05-03 08:01 (UTC) |
r-splatter
|
1.28.0-1 |
0 |
0.00
|
Simple Simulation of Single-cell RNA Sequencing Data |
BioArchLinuxBot
|
2024-05-03 07:48 (UTC) |
r-tcseq
|
1.28.0-1 |
0 |
0.00
|
Time course sequencing data analysis |
BioArchLinuxBot
|
2024-05-03 07:46 (UTC) |
r-subseq
|
1.34.0-1 |
0 |
0.00
|
Subsampling of high-throughput sequencing count data |
BioArchLinuxBot
|
2024-05-03 07:40 (UTC) |
r-ssviz
|
1.38.0-1 |
0 |
0.00
|
A small RNA-seq visualizer and analysis toolkit |
BioArchLinuxBot
|
2024-05-03 07:37 (UTC) |
r-fission
|
1.24.0-1 |
0 |
0.00
|
RangedSummarizedExperiment for time course RNA-Seq of fission yeast in response to stress, by Leong et al., Nat Commun 2014. |
BioArchLinuxBot
|
2024-05-03 07:35 (UTC) |
r-airway
|
1.24.0-1 |
0 |
0.00
|
RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells, by Himes et al PLoS One 2014 |
BioArchLinuxBot
|
2024-05-03 07:33 (UTC) |
r-synmut
|
1.20.0-1 |
0 |
0.00
|
SynMut: Designing Synonymously Mutated Sequences with Different Genomic Signatures |
BioArchLinuxBot
|
2024-05-03 07:31 (UTC) |
r-rnaseqsamplesizedata
|
1.36.0-1 |
0 |
0.00
|
RnaSeqSampleSizeData |
BioArchLinuxBot
|
2024-05-03 07:01 (UTC) |
r-cager
|
2.10.0-1 |
0 |
0.00
|
Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining |
BioArchLinuxBot
|
2024-05-03 06:36 (UTC) |
r-rnamodr.ribomethseq
|
1.18.0-1 |
0 |
0.00
|
Detection of 2'-O methylations by RiboMethSeq |
BioArchLinuxBot
|
2024-05-03 06:34 (UTC) |
r-rnamodr.alkanilineseq
|
1.18.0-1 |
0 |
0.00
|
Detection of m7G, m3C and D modification by AlkAnilineSeq |
BioArchLinuxBot
|
2024-05-03 06:31 (UTC) |
r-cummerbund
|
2.46.0-1 |
0 |
0.00
|
Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data. |
BioArchLinuxBot
|
2024-05-03 06:07 (UTC) |
r-htseqgenie
|
4.34.0-1 |
0 |
0.00
|
A NGS analysis pipeline. |
BioArchLinuxBot
|
2024-05-03 05:54 (UTC) |
r-rqc
|
1.38.0-1 |
0 |
0.00
|
Quality Control Tool for High-Throughput Sequencing Data |
BioArchLinuxBot
|
2024-05-03 05:47 (UTC) |
r-mitoclone2
|
1.10.0-1 |
0 |
0.00
|
Clonal Population Identification in Single-Cell RNA-Seq Data using Mitochondrial and Somatic Mutations |
BioArchLinuxBot
|
2024-05-03 05:45 (UTC) |
r-bubbletree
|
2.34.0-1 |
0 |
0.00
|
BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data |
BioArchLinuxBot
|
2024-05-03 05:42 (UTC) |
r-borealis
|
1.8.0-1 |
0 |
0.00
|
Bisulfite-seq OutlieR mEthylation At singLe-sIte reSolution |
pekkarr
|
2024-05-03 05:37 (UTC) |
r-kissde
|
1.24.0-1 |
0 |
0.00
|
Retrieves Condition-Specific Variants in RNA-Seq Data |
BioArchLinuxBot
|
2024-05-03 05:36 (UTC) |
r-dmrseq
|
1.24.0-1 |
0 |
0.00
|
Detection and inference of differentially methylated regions from Whole Genome Bisulfite Sequencing |
BioArchLinuxBot
|
2024-05-03 05:32 (UTC) |
r-somnibus
|
1.12.0-1 |
0 |
0.00
|
Smooth modeling of bisulfite sequencing |
BioArchLinuxBot
|
2024-05-03 05:31 (UTC) |
r-consensusde
|
1.22.0-1 |
0 |
0.00
|
RNA-seq analysis using multiple algorithms |
BioArchLinuxBot
|
2024-05-03 05:29 (UTC) |
r-inpas
|
2.12.0-1 |
0 |
0.00
|
A Bioconductor package for identifying novel Alternative PolyAdenylation Sites (PAS) from RNA-seq data |
BioArchLinuxBot
|
2024-05-03 05:21 (UTC) |
r-fccac
|
1.30.0-1 |
0 |
0.00
|
functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets |
BioArchLinuxBot
|
2024-05-03 05:17 (UTC) |
r-lineagespot
|
1.8.0-1 |
0 |
0.00
|
Detection of SARS-CoV-2 lineages in wastewater samples using next-generation sequencing |
pekkarr
|
2024-05-03 05:16 (UTC) |
r-raids
|
1.2.0-1 |
0 |
0.00
|
Accurate Inference of Genetic Ancestry from Cancer Sequences |
pekkarr
|
2024-05-03 05:12 (UTC) |
r-rarevariantvis
|
2.32.0-1 |
0 |
0.00
|
A suite for analysis of rare genomic variants in whole genome sequencing data |
BioArchLinuxBot
|
2024-05-03 05:10 (UTC) |
r-madseq
|
1.30.0-1 |
0 |
0.00
|
Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data |
BioArchLinuxBot
|
2024-05-03 05:04 (UTC) |
r-proteodisco
|
1.10.0-1 |
0 |
0.00
|
Generation of customized protein variant databases from genomic variants, splice-junctions and manual sequences |
BioArchLinuxBot
|
2024-05-03 05:02 (UTC) |