794 packages found. Page 3 of 16.

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Name Version Votes Popularity? Description Maintainer Last Updated
r-uncoverapplib 1.14.0-1 0 0.00 Interactive graphical application for clinical assessment of sequence coverage at the base-pair level BioArchLinuxBot 2024-05-03 12:47 (UTC)
r-vulcan 1.26.0-1 0 0.00 VirtUaL ChIP-Seq data Analysis using Networks BioArchLinuxBot 2024-05-03 12:35 (UTC)
r-guideseq 1.34.0-1 0 0.00 GUIDE-seq analysis pipeline BioArchLinuxBot 2024-05-03 12:32 (UTC)
r-redseq 1.50.0-1 0 0.00 Analysis of high-throughput sequencing data processed by restriction enzyme digestion BioArchLinuxBot 2024-05-03 12:31 (UTC)
r-biseq 1.44.0-1 0 0.00 Processing and analyzing bisulfite sequencing data BioArchLinuxBot 2024-05-03 12:30 (UTC)
r-methylseekr 1.44.0-1 0 0.00 Segmentation of Bis-seq data BioArchLinuxBot 2024-05-03 12:29 (UTC)
r-slalom 1.26.0-1 0 0.00 Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data BioArchLinuxBot 2024-05-03 12:22 (UTC)
r-aucell 1.26.0-1 0 0.00 AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures) BioArchLinuxBot 2024-05-03 12:21 (UTC)
r-mgfr 1.30.0-1 0 0.00 Marker Gene Finder in RNA-seq data BioArchLinuxBot 2024-05-03 12:09 (UTC)
r-chippeakanno 3.38.0-1 0 0.00 Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments, or any experiments that result in large number of genomic interval data BioArchLinuxBot 2024-05-03 12:06 (UTC)
jagged-alliance-deadly-games-gog 1.13-3 0 0.00 A turn-based tactics game developed as a sequel of Jagged Alliance and features new missions and a multiplayer mode. nickelc 2024-05-03 09:45 (UTC)
r-chipqc 1.40.0-1 0 0.00 Quality metrics for ChIPseq data BioArchLinuxBot 2024-05-03 09:33 (UTC)
r-regionreport 1.38.0-1 0 0.00 Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results BioArchLinuxBot 2024-05-03 09:23 (UTC)
r-diffbind 3.14.0-1 0 0.00 Differential Binding Analysis of ChIP-Seq Peak Data BioArchLinuxBot 2024-05-03 09:19 (UTC)
r-spsimseq 1.14.0-1 0 0.00 Semi-parametric simulation tool for bulk and single-cell RNA sequencing data BioArchLinuxBot 2024-05-03 08:47 (UTC)
r-srnadiff 1.24.0-1 0 0.00 Finding differentially expressed unannotated genomic regions from RNA-seq data BioArchLinuxBot 2024-05-03 08:36 (UTC)
r-tradeseq 1.18.0-1 0 0.00 trajectory-based differential expression analysis for sequencing data BioArchLinuxBot 2024-05-03 08:30 (UTC)
r-derfinder 1.38.0-1 0 0.00 Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach BioArchLinuxBot 2024-05-03 08:18 (UTC)
r-splicinggraphs 1.44.0-1 0 0.00 Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them BioArchLinuxBot 2024-05-03 08:14 (UTC)
r-titancna 1.42.0-1 0 0.00 Subclonal copy number and LOH prediction from whole genome sequencing of tumours BioArchLinuxBot 2024-05-03 08:09 (UTC)
r-zellkonverter 1.14.0-1 0 0.00 Conversion Between scRNA-seq Objects BioArchLinuxBot 2024-05-03 08:03 (UTC)
r-tapseq 1.16.0-1 0 0.00 Targeted scRNA-seq primer design for TAP-seq BioArchLinuxBot 2024-05-03 08:01 (UTC)
r-splatter 1.28.0-1 0 0.00 Simple Simulation of Single-cell RNA Sequencing Data BioArchLinuxBot 2024-05-03 07:48 (UTC)
r-tcseq 1.28.0-1 0 0.00 Time course sequencing data analysis BioArchLinuxBot 2024-05-03 07:46 (UTC)
r-subseq 1.34.0-1 0 0.00 Subsampling of high-throughput sequencing count data BioArchLinuxBot 2024-05-03 07:40 (UTC)
r-ssviz 1.38.0-1 0 0.00 A small RNA-seq visualizer and analysis toolkit BioArchLinuxBot 2024-05-03 07:37 (UTC)
r-fission 1.24.0-1 0 0.00 RangedSummarizedExperiment for time course RNA-Seq of fission yeast in response to stress, by Leong et al., Nat Commun 2014. BioArchLinuxBot 2024-05-03 07:35 (UTC)
r-airway 1.24.0-1 0 0.00 RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells, by Himes et al PLoS One 2014 BioArchLinuxBot 2024-05-03 07:33 (UTC)
r-synmut 1.20.0-1 0 0.00 SynMut: Designing Synonymously Mutated Sequences with Different Genomic Signatures BioArchLinuxBot 2024-05-03 07:31 (UTC)
r-rnaseqsamplesizedata 1.36.0-1 0 0.00 RnaSeqSampleSizeData BioArchLinuxBot 2024-05-03 07:01 (UTC)
r-cager 2.10.0-1 0 0.00 Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining BioArchLinuxBot 2024-05-03 06:36 (UTC)
r-rnamodr.ribomethseq 1.18.0-1 0 0.00 Detection of 2'-O methylations by RiboMethSeq BioArchLinuxBot 2024-05-03 06:34 (UTC)
r-rnamodr.alkanilineseq 1.18.0-1 0 0.00 Detection of m7G, m3C and D modification by AlkAnilineSeq BioArchLinuxBot 2024-05-03 06:31 (UTC)
r-cummerbund 2.46.0-1 0 0.00 Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data. BioArchLinuxBot 2024-05-03 06:07 (UTC)
r-htseqgenie 4.34.0-1 0 0.00 A NGS analysis pipeline. BioArchLinuxBot 2024-05-03 05:54 (UTC)
r-rqc 1.38.0-1 0 0.00 Quality Control Tool for High-Throughput Sequencing Data BioArchLinuxBot 2024-05-03 05:47 (UTC)
r-mitoclone2 1.10.0-1 0 0.00 Clonal Population Identification in Single-Cell RNA-Seq Data using Mitochondrial and Somatic Mutations BioArchLinuxBot 2024-05-03 05:45 (UTC)
r-bubbletree 2.34.0-1 0 0.00 BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data BioArchLinuxBot 2024-05-03 05:42 (UTC)
r-borealis 1.8.0-1 0 0.00 Bisulfite-seq OutlieR mEthylation At singLe-sIte reSolution pekkarr 2024-05-03 05:37 (UTC)
r-kissde 1.24.0-1 0 0.00 Retrieves Condition-Specific Variants in RNA-Seq Data BioArchLinuxBot 2024-05-03 05:36 (UTC)
r-dmrseq 1.24.0-1 0 0.00 Detection and inference of differentially methylated regions from Whole Genome Bisulfite Sequencing BioArchLinuxBot 2024-05-03 05:32 (UTC)
r-somnibus 1.12.0-1 0 0.00 Smooth modeling of bisulfite sequencing BioArchLinuxBot 2024-05-03 05:31 (UTC)
r-consensusde 1.22.0-1 0 0.00 RNA-seq analysis using multiple algorithms BioArchLinuxBot 2024-05-03 05:29 (UTC)
r-inpas 2.12.0-1 0 0.00 A Bioconductor package for identifying novel Alternative PolyAdenylation Sites (PAS) from RNA-seq data BioArchLinuxBot 2024-05-03 05:21 (UTC)
r-fccac 1.30.0-1 0 0.00 functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets BioArchLinuxBot 2024-05-03 05:17 (UTC)
r-lineagespot 1.8.0-1 0 0.00 Detection of SARS-CoV-2 lineages in wastewater samples using next-generation sequencing pekkarr 2024-05-03 05:16 (UTC)
r-raids 1.2.0-1 0 0.00 Accurate Inference of Genetic Ancestry from Cancer Sequences pekkarr 2024-05-03 05:12 (UTC)
r-rarevariantvis 2.32.0-1 0 0.00 A suite for analysis of rare genomic variants in whole genome sequencing data BioArchLinuxBot 2024-05-03 05:10 (UTC)
r-madseq 1.30.0-1 0 0.00 Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data BioArchLinuxBot 2024-05-03 05:04 (UTC)
r-proteodisco 1.10.0-1 0 0.00 Generation of customized protein variant databases from genomic variants, splice-junctions and manual sequences BioArchLinuxBot 2024-05-03 05:02 (UTC)

794 packages found. Page 3 of 16.

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