794 packages found. Page 5 of 16.

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Name Version Votes Popularity? Description Maintainer Last Updated
r-scdd 1.28.0-1 0 0.00 Mixture modeling of single-cell RNA-seq data to identify genes with differential distributions BioArchLinuxBot 2024-05-03 01:34 (UTC)
r-basics 2.16.0-1 0 0.00 Bayesian Analysis of Single-Cell Sequencing data BioArchLinuxBot 2024-05-03 01:33 (UTC)
r-chipsim 1.58.0-1 0 0.00 Simulation of ChIP-seq experiments BioArchLinuxBot 2024-05-03 01:28 (UTC)
r-chipseqr 1.58.0-1 0 0.00 Identifying Protein Binding Sites in High-Throughput Sequencing Data BioArchLinuxBot 2024-05-03 01:27 (UTC)
r-segmentseq 2.38.0-1 0 0.00 Methods for identifying small RNA loci from high-throughput sequencing data BioArchLinuxBot 2024-05-03 01:26 (UTC)
r-chipseq 1.54.0-1 0 0.00 chipseq: A package for analyzing chipseq data BioArchLinuxBot 2024-05-03 01:22 (UTC)
r-rifi 1.8.0-1 0 0.00 'rifi' analyses data from rifampicin time series created by microarray or RNAseq pekkarr 2024-05-03 01:18 (UTC)
r-genextender 1.30.0-1 0 0.00 Optimized Functional Annotation Of ChIP-seq Data BioArchLinuxBot 2024-05-03 01:16 (UTC)
r-sevenc 1.24.0-1 0 0.00 Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs BioArchLinuxBot 2024-05-03 01:14 (UTC)
r-seqsetvis 1.24.0-1 0 0.00 Set Based Visualizations for Next-Gen Sequencing Data BioArchLinuxBot 2024-05-03 01:06 (UTC)
r-r3cseq 1.50.0-1 0 0.00 Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq) BioArchLinuxBot 2024-05-03 01:05 (UTC)
r-normr 1.30.0-1 0 0.00 Normalization and difference calling in ChIP-seq data BioArchLinuxBot 2024-05-03 01:03 (UTC)
r-pram 1.20.0-1 0 0.00 Pooling RNA-seq datasets for assembling transcript models BioArchLinuxBot 2024-05-03 01:01 (UTC)
r-excluster 1.22.0-1 0 0.00 ExCluster robustly detects differentially expressed exons between two conditions of RNA-seq data, requiring at least two independent biological replicates per condition BioArchLinuxBot 2024-05-03 00:59 (UTC)
r-motifdb 1.46.0-1 0 0.00 An Annotated Collection of Protein-DNA Binding Sequence Motifs BioArchLinuxBot 2024-05-03 00:58 (UTC)
r-methylkit 1.30.0-1 0 0.00 DNA methylation analysis from high-throughput bisulfite sequencing results BioArchLinuxBot 2024-05-03 00:57 (UTC)
r-grohmm 1.38.0-1 0 0.00 GRO-seq Analysis Pipeline BioArchLinuxBot 2024-05-03 00:56 (UTC)
r-roar 1.40.0-1 0 0.00 Identify differential APA usage from RNA-seq alignments BioArchLinuxBot 2024-05-03 00:55 (UTC)
r-coseq 1.28.0-1 0 0.00 Co-Expression Analysis of Sequencing Data BioArchLinuxBot 2024-05-03 00:16 (UTC)
r-celaref 1.22.0-1 0 0.00 Single-cell RNAseq cell cluster labelling by reference BioArchLinuxBot 2024-05-03 00:15 (UTC)
r-powsc 1.12.0-1 0 0.00 Simulation, power evaluation, and sample size recommendation for single cell RNA-seq BioArchLinuxBot 2024-05-03 00:15 (UTC)
r-slingshot 2.12.0-1 0 0.00 Tools for ordering single-cell sequencing BioArchLinuxBot 2024-05-03 00:14 (UTC)
r-scarray.sat 1.4.0-1 0 0.00 Large-scale single-cell RNA-seq data analysis using GDS files and Seurat pekkarr 2024-05-03 00:09 (UTC)
r-scran 1.32.0-1 0 0.00 Methods for Single-Cell RNA-Seq Data Analysis BioArchLinuxBot 2024-05-03 00:05 (UTC)
r-partcnv 1.2.0-1 0 0.00 Infer locally aneuploid cells using single cell RNA-seq data pekkarr 2024-05-03 00:04 (UTC)
r-scannotatr 1.10.0-1 0 0.00 Pretrained learning models for cell type prediction on single cell RNA-sequencing data BioArchLinuxBot 2024-05-02 23:57 (UTC)
r-infercnv 1.20.0-1 0 0.00 Infer Copy Number Variation from Single-Cell RNA-Seq Data BioArchLinuxBot 2024-05-02 23:54 (UTC)
r-single 1.7.0-1 0 0.00 Accurate consensus sequence from nanopore reads of a gene library pekkarr 2024-05-02 23:50 (UTC)
r-prebs 1.44.0-1 0 0.00 Probe region expression estimation for RNA-seq data for improved microarray comparability BioArchLinuxBot 2024-05-02 23:49 (UTC)
r-mosaics 2.42.0-1 0 0.00 MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq) BioArchLinuxBot 2024-05-02 23:44 (UTC)
r-breakpointr 1.22.0-1 0 0.00 Find breakpoints in Strand-seq data BioArchLinuxBot 2024-05-02 23:42 (UTC)
r-chromstar 1.30.0-1 0 0.00 Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data BioArchLinuxBot 2024-05-02 23:41 (UTC)
r-mdts 1.24.0-1 0 0.00 Detection of de novo deletion in targeted sequencing trios BioArchLinuxBot 2024-05-02 23:41 (UTC)
r-aneufinder 1.32.0-1 0 0.00 Analysis of Copy Number Variation in Single-Cell-Sequencing Data BioArchLinuxBot 2024-05-02 23:40 (UTC)
r-basicstarrseq 1.32.0-1 0 0.00 Basic peak calling on STARR-seq data BioArchLinuxBot 2024-05-02 23:39 (UTC)
r-pics 2.48.0-1 0 0.00 Probabilistic inference of ChIP-seq BioArchLinuxBot 2024-05-02 23:38 (UTC)
r-moanin 1.12.0-1 0 0.00 An R Package for Time Course RNASeq Data Analysis BioArchLinuxBot 2024-05-02 23:29 (UTC)
r-cellity 1.32.0-1 0 0.00 Quality Control for Single-Cell RNA-seq Data BioArchLinuxBot 2024-05-02 23:26 (UTC)
r-seq2pathway 1.36.0-1 0 0.00 a novel tool for functional gene-set (or termed as pathway) analysis of next-generation sequencing data BioArchLinuxBot 2024-05-02 23:16 (UTC)
r-seqgsea 1.44.0-1 0 0.00 Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing BioArchLinuxBot 2024-05-02 23:07 (UTC)
r-goexpress 1.38.0-1 0 0.00 Visualise microarray and RNAseq data using gene ontology annotations BioArchLinuxBot 2024-05-02 23:05 (UTC)
r-erssa 1.22.0-1 0 0.00 Empirical RNA-seq Sample Size Analysis BioArchLinuxBot 2024-05-02 22:21 (UTC)
r-vidger 1.24.0-1 0 0.00 Create rapid visualizations of RNAseq data in R BioArchLinuxBot 2024-05-02 22:14 (UTC)
r-desubs 1.30.0-1 0 0.00 DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments BioArchLinuxBot 2024-05-02 22:13 (UTC)
r-anaquin 2.28.0-1 0 0.00 Statistical analysis of sequins BioArchLinuxBot 2024-05-02 22:11 (UTC)
r-htsfilter 1.44.0-1 0 0.00 Filter replicated high-throughput transcriptome sequencing data BioArchLinuxBot 2024-05-02 22:09 (UTC)
r-dewseq 1.18.0-1 0 0.00 Differential Expressed Windows Based on Negative Binomial Distribution BioArchLinuxBot 2024-05-02 22:08 (UTC)
r-anota2seq 1.26.0-1 0 0.00 Generally applicable transcriptome-wide analysis of translational efficiency using anota2seq BioArchLinuxBot 2024-05-02 22:07 (UTC)
r-mlseq 2.22.0-1 0 0.00 Machine Learning Interface for RNA-Seq Data BioArchLinuxBot 2024-05-02 22:06 (UTC)
r-iloreg 1.14.0-1 0 0.00 a tool for high-resolution cell population identification from scRNA-Seq data BioArchLinuxBot 2024-05-02 22:03 (UTC)

794 packages found. Page 5 of 16.

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