792 packages found. Page 7 of 16.

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Name Version Votes Popularity? Description Maintainer Last Updated
r-preseqr 4.0.0-7 0 0.00 Predicting Species Accumulation Curves BioArchLinuxBot 2024-04-14 12:18 (UTC)
r-prebs 1.44.0-1 0 0.00 Probe region expression estimation for RNA-seq data for improved microarray comparability BioArchLinuxBot 2024-05-02 23:49 (UTC)
r-pram 1.20.0-1 0 0.00 Pooling RNA-seq datasets for assembling transcript models BioArchLinuxBot 2024-05-03 01:01 (UTC)
r-pqsfinder 2.20.0-1 0 0.00 Identification of potential quadruplex forming sequences BioArchLinuxBot 2024-05-02 00:13 (UTC)
r-ppcseq 1.12.0-1 0 0.00 Probabilistic Outlier Identification for RNA Sequencing Generalized Linear Models BioArchLinuxBot 2024-05-02 05:46 (UTC)
r-powsc 1.12.0-1 0 0.00 Simulation, power evaluation, and sample size recommendation for single cell RNA-seq BioArchLinuxBot 2024-05-03 00:15 (UTC)
r-polyester 1.39.0-1 0 0.00 Simulate RNA-seq reads BioArchLinuxBot 2024-05-02 00:19 (UTC)
r-poiclaclu 1.0.2.1-10 0 0.00 Classification and Clustering of Sequencing Data Based on a Poisson Model BioArchLinuxBot 2024-04-24 20:41 (UTC)
r-pinfsc50 1.3.0-2 0 0.00 Sequence ('FASTA'), Annotation ('GFF') and Variants ('VCF') for 17 Samples of 'P. Infestans" and 1 'P. Mirabilis' BioArchLinuxBot 2024-03-16 18:08 (UTC)
r-pics 2.48.0-1 0 0.00 Probabilistic inference of ChIP-seq BioArchLinuxBot 2024-05-02 23:38 (UTC)
r-phyloseq 1.48.0-1 0 0.00 Handling and analysis of high-throughput microbiome census data BioArchLinuxBot 2024-05-02 00:01 (UTC)
r-phipdata 1.12.0-1 0 0.00 Container for PhIP-Seq Experiments BioArchLinuxBot 2024-05-02 20:10 (UTC)
r-phantasuslite 1.0.0-3 0 0.00 Loading and annotation RNA-Seq counts matrices pekkarr 2024-04-27 02:21 (UTC)
r-periodicdna 1.14.0-1 0 0.00 Set of tools to identify periodic occurrences of k-mers in DNA sequences BioArchLinuxBot 2024-05-03 03:08 (UTC)
r-peptides 2.4.6-1 0 0.00 Calculate Indices and Theoretical Physicochemical Properties of Protein Sequences BioArchLinuxBot 2023-12-14 00:13 (UTC)
r-peco 1.16.0-1 0 0.00 A Supervised Approach for **P**r**e**dicting **c**ell Cycle Pr**o**gression using scRNA-seq data BioArchLinuxBot 2024-05-03 01:51 (UTC)
r-pcaexplorer 2.30.0-1 0 0.00 Interactive Visualization of RNA-seq Data Using a Principal Components Approach BioArchLinuxBot 2024-05-03 14:35 (UTC)
r-pasilla 1.32.0-1 0 0.00 Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011. BioArchLinuxBot 2024-05-03 13:45 (UTC)
r-partcnv 1.2.0-1 0 0.00 Infer locally aneuploid cells using single cell RNA-seq data pekkarr 2024-05-03 00:04 (UTC)
r-outrider 1.22.0-1 0 0.00 OUTlier in RNA-Seq fInDER BioArchLinuxBot 2024-05-04 12:16 (UTC)
r-oscope 1.34.0-1 0 0.00 Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq BioArchLinuxBot 2024-05-01 19:49 (UTC)
r-orfhunter 1.12.0-1 0 0.00 Predict open reading frames in nucleotide sequences BioArchLinuxBot 2024-05-03 03:21 (UTC)
r-ompbam 1.8.0-1 0 0.00 C++ Library for OpenMP-based multi-threaded sequential profiling of Binary Alignment Map (BAM) files pekkarr 2024-05-02 05:08 (UTC)
r-odseq 1.32.0-1 0 0.00 Outlier detection in multiple sequence alignments BioArchLinuxBot 2024-05-02 01:53 (UTC)
r-normr 1.30.0-1 0 0.00 Normalization and difference calling in ChIP-seq data BioArchLinuxBot 2024-05-03 01:03 (UTC)
r-noiseq 2.48.0-1 0 0.00 Exploratory analysis and differential expression for RNA-seq data BioArchLinuxBot 2024-05-02 12:31 (UTC)
r-newwave 1.14.0-1 0 0.00 Negative binomial model for scRNA-seq BioArchLinuxBot 2024-05-02 21:39 (UTC)
r-netsmooth 1.24.0-1 0 0.00 Network smoothing for scRNAseq BioArchLinuxBot 2024-05-03 18:51 (UTC)
r-nbpseq 0.3.1-1 0 0.00 Negative Binomial Models for RNA-Sequencing Data BioArchLinuxBot 2022-06-09 13:04 (UTC)
r-nbamseq 1.20.0-1 0 0.00 Negative Binomial Additive Model for RNA-Seq Data BioArchLinuxBot 2024-05-03 13:00 (UTC)
r-nanomethviz 3.0.0-1 0 0.00 Visualise methlation data from Oxford Nanopore sequencing BioArchLinuxBot 2024-05-03 04:32 (UTC)
r-nadfinder 1.28.0-1 0 0.00 Call wide peaks for sequencing data BioArchLinuxBot 2024-05-03 19:20 (UTC)
r-muscle 3.46.0-1 0 0.00 Multiple Sequence Alignment with MUSCLE BioArchLinuxBot 2024-05-02 00:21 (UTC)
r-muscat 1.18.0-1 0 0.00 Multi-sample multi-group scRNA-seq data analysis tools BioArchLinuxBot 2024-05-03 01:47 (UTC)
r-multirnaflow 1.0.0-3 0 0.00 An R package for analysing RNA-seq raw counts with several biological conditions and different time points pekkarr 2024-04-27 06:59 (UTC)
r-msgbsr 1.26.0-1 0 0.00 msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functions BioArchLinuxBot 2023-10-27 15:27 (UTC)
r-msar 0.6.0-2 0 0.00 Multiple Sequence Alignment for R Shiny BioArchLinuxBot 2022-06-06 08:17 (UTC)
r-msa2dist 1.8.0-1 0 0.00 MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis pekkarr 2024-05-04 12:18 (UTC)
r-msa 1.36.0-1 0 0.00 Multiple Sequence Alignment BioArchLinuxBot 2024-05-02 00:12 (UTC)
r-mpfe 1.40.0-1 0 0.00 Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data BioArchLinuxBot 2024-05-02 04:18 (UTC)
r-motifstack 1.48.0-1 0 0.00 Plot stacked logos for single or multiple DNA, RNA and amino acid sequence BioArchLinuxBot 2024-05-03 18:57 (UTC)
r-motifdb 1.46.0-1 0 0.00 An Annotated Collection of Protein-DNA Binding Sequence Motifs BioArchLinuxBot 2024-05-03 00:58 (UTC)
r-motifcounter 1.28.0-1 0 0.00 R package for analysing TFBSs in DNA sequences BioArchLinuxBot 2024-05-02 00:22 (UTC)
r-motif2site 1.8.0-1 0 0.00 Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across conditions pekkarr 2024-05-03 03:20 (UTC)
r-mosaics 2.42.0-1 0 0.00 MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq) BioArchLinuxBot 2024-05-02 23:44 (UTC)
r-monocle 2.32.0-1 0 0.00 Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq BioArchLinuxBot 2024-05-02 12:52 (UTC)
r-modstrings 1.20.0-1 0 0.00 Working with modified nucleotide sequences BioArchLinuxBot 2024-05-02 00:01 (UTC)
r-moanin 1.12.0-1 0 0.00 An R Package for Time Course RNASeq Data Analysis BioArchLinuxBot 2024-05-02 23:29 (UTC)
r-mmdiff2 1.32.0-1 0 0.00 Statistical Testing for ChIP-Seq data sets BioArchLinuxBot 2024-05-03 03:14 (UTC)
r-mmappr2 1.10.0-4 0 0.00 Mutation Mapping Analysis Pipeline for Pooled RNA-Seq BioArchLinuxBot 2022-11-04 06:36 (UTC)

792 packages found. Page 7 of 16.

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